Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g01124 | ATGCCCTACTTAACTGAGCAATGGGGAGACTTGCCGTTTAAGGTTGACGACGCCGAAGATATGATCGTCTTTAATGCTCTATACGACGCCGTTTCTTATGGCTGGTCGCCAATTGATTCTGTTCTACCCTCTACGACTGTAATAGCAAGCGCAAAGCTGGAACGCAAGCGAACGGAGCCGATGATAGGGCGGCGGTACATAGGGGTCAGGAGAAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCGACTAGAAAAGGGGTGAGAGTTTGGCTCGGCACTTATGAGACGGCTGAGAGTGCAGCTTTGGCTTATGATCGTGCTGCTTTCGAAATGCGTGGCTCCAAAGCTTTGCTTAATTTTCCAAACTGCATTACGATCGATGAGCCAGAGCCCGTAAGAATTCCGGCTACGCGAAGAGCGCCGGAGCCGGCATTCGGATCTGGGCGGCGAAGTTGCTCGGATAAGAAAATCAAAAGCTTGCCTGAAGCGAGGAGTGAAATGGGAAGTTCTCCGATGTGCTTAAAAGTTGACATAGAGATAGCTCAGTCACCACTTGGCAAAAATTGGATTGGTTAA | 582 | 50.52 | MPYLTEQWGDLPFKVDDAEDMIVFNALYDAVSYGWSPIDSVLPSTTVIASAKLERKRTEPMIGRRYIGVRRRPWGKFAAEIRDSTRKGVRVWLGTYETAESAALAYDRAAFEMRGSKALLNFPNCITIDEPEPVRIPATRRAPEPAFGSGRRSCSDKKIKSLPEARSEMGSSPMCLKVDIEIAQSPLGKNWIG | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36177966 | 36178547 | - | Bma005122.1 | Bma10g01124 | 90187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g01124 | 193 | PANTHER | DNA-BINDING DOMAIN | 1 | 39 | IPR044808 | GO:0003700|GO:0009873 | |
Bma10g01124 | 193 | PANTHER | DNA-BINDING DOMAIN | 51 | 155 | IPR044808 | GO:0003700|GO:0009873 | |
Bma10g01124 | 193 | Pfam | AP2 domain | 65 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01124 | 193 | PRINTS | Ethylene responsive element binding protein signature | 89 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01124 | 193 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01124 | 193 | SMART | rav1_2 | 65 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01124 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01124 | 193 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED | 1 | 39 | - | - | |
Bma10g01124 | 193 | SUPERFAMILY | DNA-binding domain | 65 | 124 | IPR016177 | GO:0003677 | |
Bma10g01124 | 193 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED | 51 | 155 | - | - | |
Bma10g01124 | 193 | Gene3D | AP2/ERF domain | 64 | 124 | IPR036955 | GO:0003700|GO:0006355 | |
Bma10g01124 | 193 | CDD | AP2 | 65 | 124 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g01124 | Bma-Chr10:36177966 | Bma12g00674 | Bma-Chr12:27964462 | 6.79E-40 | dispersed | |
Bma15g00627 | Bma-Chr15:8585047 | Bma10g01124 | Bma-Chr10:36177966 | 3.57E-22 | dispersed | |
Bma15g00639 | Bma-Chr15:9146437 | Bma10g01124 | Bma-Chr10:36177966 | 3.42E-30 | dispersed | |
Bma10g01124 | Bma-Chr10:36177966 | Bma05g00742 | Bma-Chr5:43756219 | 1.33E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57972 | PF00847 | AP2 | 3.10E-14 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g01124 | K09286 | K13432 | oeu:111405546 | 198.749 |