Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01124 ATGCCCTACTTAACTGAGCAATGGGGAGACTTGCCGTTTAAGGTTGACGACGCCGAAGATATGATCGTCTTTAATGCTCTATACGACGCCGTTTCTTATGGCTGGTCGCCAATTGATTCTGTTCTACCCTCTACGACTGTAATAGCAAGCGCAAAGCTGGAACGCAAGCGAACGGAGCCGATGATAGGGCGGCGGTACATAGGGGTCAGGAGAAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCGACTAGAAAAGGGGTGAGAGTTTGGCTCGGCACTTATGAGACGGCTGAGAGTGCAGCTTTGGCTTATGATCGTGCTGCTTTCGAAATGCGTGGCTCCAAAGCTTTGCTTAATTTTCCAAACTGCATTACGATCGATGAGCCAGAGCCCGTAAGAATTCCGGCTACGCGAAGAGCGCCGGAGCCGGCATTCGGATCTGGGCGGCGAAGTTGCTCGGATAAGAAAATCAAAAGCTTGCCTGAAGCGAGGAGTGAAATGGGAAGTTCTCCGATGTGCTTAAAAGTTGACATAGAGATAGCTCAGTCACCACTTGGCAAAAATTGGATTGGTTAA 582 50.52 MPYLTEQWGDLPFKVDDAEDMIVFNALYDAVSYGWSPIDSVLPSTTVIASAKLERKRTEPMIGRRYIGVRRRPWGKFAAEIRDSTRKGVRVWLGTYETAESAALAYDRAAFEMRGSKALLNFPNCITIDEPEPVRIPATRRAPEPAFGSGRRSCSDKKIKSLPEARSEMGSSPMCLKVDIEIAQSPLGKNWIG 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36177966 36178547 - Bma005122.1 Bma10g01124 90187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01124 193 PANTHER DNA-BINDING DOMAIN 1 39 IPR044808 GO:0003700|GO:0009873
Bma10g01124 193 PANTHER DNA-BINDING DOMAIN 51 155 IPR044808 GO:0003700|GO:0009873
Bma10g01124 193 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Bma10g01124 193 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Bma10g01124 193 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Bma10g01124 193 SMART rav1_2 65 132 IPR001471 GO:0003700|GO:0006355
Bma10g01124 193 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Bma10g01124 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 1 39 - -
Bma10g01124 193 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Bma10g01124 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 51 155 - -
Bma10g01124 193 Gene3D AP2/ERF domain 64 124 IPR036955 GO:0003700|GO:0006355
Bma10g01124 193 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01124 Bma-Chr10:36177966 Bma12g00674 Bma-Chr12:27964462 6.79E-40 dispersed
Bma15g00627 Bma-Chr15:8585047 Bma10g01124 Bma-Chr10:36177966 3.57E-22 dispersed
Bma15g00639 Bma-Chr15:9146437 Bma10g01124 Bma-Chr10:36177966 3.42E-30 dispersed
Bma10g01124 Bma-Chr10:36177966 Bma05g00742 Bma-Chr5:43756219 1.33E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57972 PF00847 AP2 3.10E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01124 K09286 K13432 oeu:111405546 198.749