Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01131 ATGAAGGTCAAGCTTGAGGAACTATTAAGAAGTAGTGATTGTCATCCTGATGAATTGACCTCCTTGCAATTATCCTTCATTACCTCATGTTCTTTATCACCTGCGCTCACTTCAGATACAGAGAAGGAATTTTTATCTTTGAAGTCAACATCTTCTCTTGTTAGGAAAAGTACTGATGAGTCTGTTAATTCTACAGTGGAGCAGAAAGAATATCTAATTGATCCTTCTCTTCCTGACATCAAAAATAGTATTTATGCAACTGATGAGTTTCGCATGTTTTCCTTCAAGGTGAGACCTTGTTCACGAGCATATTCACATGATTGGACTGATTGTCCTTTTGTTCACCCTGGGGAGAATGCTCGCAGAAGGGATCCAAGAAAGTTTCACTACAGTTGTGTACCTTGTCCAGATTTTCGAAAGGGTGCTTGTAGGCGTGGAGACATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTCCATCCTGCTCAGTATCGAACACGCCTATGCAAGGATGGGGCAAGTTGTGATAGACGGGTTTGTTTTTTTGCCCATGCAACTTTGGAGCTCAGGCCCTTGTATGTTTCTACTGGTTCTGCTGTTCCTTCGCCACGGTTGTCAACATCAGCACCTAATGTTATGGACATGGCTGCCGCATTAAGTCTCTTTCCTAGATCTCCTTCATCATTATCAGTCATGTCTCCATTTTCTCAGCCAATGTCTCCATTTTCTCAGCCAATGTCTCCTTCTCCATTTTCTCAGTCAATGTCTCCAGCCTCAACAGCCTGGGAGCAGCCAAATGTACCCACTCTTGATCTTCCTGGAAGCAGCTTACAATCCAGTCGCTTGAGAACTTCTCTTAGTGCCAGAGACATGTCACTGGAAGATTTAAATTGGTTGATGAATCATGACTCACAGAAACAGCTTGTGAGTGACGAGAATTTTTTCTCGCAGCTCCGCCCTAGTTCTGTCTGTCTTAGCCGCTCTGGCAGACCTAAAGCTCTAACTCCTTCCAATCTGGAAGAGCTTTTCTTTTCTGAGATATCTTCATCACCTCGATTTTCTGATCCTGGAGCAGTCTCTGTGTTTTCTCCAACTTACAAATCATCTGTTTTGTCACAATTCCAACAACAGCAGAGCATGTTGTCACACATTAATACTAGTCTTCTGTCTCCTAAAACTGTTGAACTCCCATTGCAGCATGCTTCTTTGGGAGCCTTGTCTCCTGGACGGATGTTGCCAAGCAATGCTGATCCGATATCTCCTATGGGCTCTAGACTTTCTCCATTTGCTCATGGCGAGAAGCATCAAAATCTGCATTGCTTGAGCTCTAGGGACCTTGGTTCCAACATTCCTGTCTCAAATGGATCCCCAGTAAGGTCTTGGTCGAAATGGGGTTCTTCTATGGGAAAAGTGGATTGGTCAGTTCATGGTGATGAACTGGCTTGTTTGAGAGGATCATCGTTACTTGAGCTTGGAGGAGCCTGA 1488 44.09 MKVKLEELLRSSDCHPDELTSLQLSFITSCSLSPALTSDTEKEFLSLKSTSSLVRKSTDESVNSTVEQKEYLIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTDCPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGASCDRRVCFFAHATLELRPLYVSTGSAVPSPRLSTSAPNVMDMAAALSLFPRSPSSLSVMSPFSQPMSPFSQPMSPSPFSQSMSPASTAWEQPNVPTLDLPGSSLQSSRLRTSLSARDMSLEDLNWLMNHDSQKQLVSDENFFSQLRPSSVCLSRSGRPKALTPSNLEELFFSEISSSPRFSDPGAVSVFSPTYKSSVLSQFQQQQSMLSHINTSLLSPKTVELPLQHASLGALSPGRMLPSNADPISPMGSRLSPFAHGEKHQNLHCLSSRDLGSNIPVSNGSPVRSWSKWGSSMGKVDWSVHGDELACLRGSSLLELGGA 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37387197 37388684 + Bma005136.1 Bma10g01131 90194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01131 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Bma10g01131 495 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Bma10g01131 495 Gene3D - 130 192 - -
Bma10g01131 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 492 - -
Bma10g01131 495 ProSiteProfiles Zinc finger C3H1-type profile. 134 156 IPR000571 GO:0046872
Bma10g01131 495 PANTHER UNKEMPT FAMILY MEMBER 1 492 IPR045234 -
Bma10g01131 495 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Bma10g01131 495 SMART c3hfinal6 164 187 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01131 Bma-Chr10:37387197 Bma13g00133 Bma-Chr13:1338580 0 dispersed
Bma10g01131 Bma-Chr10:37387197 Bma10g00909 Bma-Chr10:17659737 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57973 PF00642 zf-CCCH 4.60E-05 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01131 - - gmx:100792574 582.793