Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01137 ATGAGAGATTTTAAGGAATTTTCTGCGCCATCTTCTCGTTGCGGGGCAGGAATCATCAGAAGTATCCGTTTGGAGAACTTCATGTGCCATAGTAATTTGGAAATCGAGCTTGGCGAGTGGGTCAACTTTATCACTGGTCAAAATGGAAGTGGAAAGAGCGCAATATTAACGGCTTTATGCGTTGCATTTGGGTGTCGAGCTAAAGGGACCCAAAGGGCATCTACTTTAAAGGATTTCATAAAAACTGGTTGCAGCTATGCCGTAGTTCACGTCCAATTAAGAAACGAAGGAGAAGAAGCTTTTAAGTCGGAAATATATGGTGATGTTGTTATTATTGAACGCAGAATTTCTGAGGCTAGCAATTCCACTATTTTAAAGGATTGCCAAGGAAAAAGGGTTTCCAGTCGGAAAGATGATCTTCGTGAGATAGTTGAACATTTTAATATTGATGTGGAGAATCCTTGTATGATAATGAGTCAGGACAAAAGTAGAGAGTTTCTGCATTCGGGAAATGACAAAGATAAATTTCAGTTTTTTTTCAAGGCTACACTTCTTCACCAAGTTAACGATCTCTTGAAGAATATTTTTGAACAATTGAGATCTGCAAATGCTCTAGTTGATGATTTGGAAGCCTCAATAAAACCTGTTGAGAAAGAACTTAGTGAGCTGAAAGGAAAGATAAAGAACATGGAGCATGTAGAAGAAATATCTCAACAGATTGAGCAAGTAAGTAAGAAGCTAGCATGGTCATGGGTATATGATGTGGACAGACAACTTCAGCAGCAAAGCACAAAGATTGCAAAGCTAAAAGACCGCATTCCTACGTGCCAAGCAAAAATTGATCGTCAATTGGATCGGGTGGAAAAATTGAGAAAATGCTTTTCTGAGAAAAAAGATCAGATAGCACGCATGATGGACAAAACTTCAGAAGTGAGAAGTATGAAGGATGAACTGCAAGAAACTCTTACTCAGGCAACAAAGGAGAAACTGTATCTTGAAGACGAGCATGGTCGTGAGATGAAGCACATGCAGAAGATGCTGCAGCACATCAGAATGCTTGAGCAGCAAGTCCGTAATATTCATGACCAGCATATTAGAGACACACAGGCTGAGGAGTCTGAAATAGAGGAAAAGTTGAAGGAGCTCCAGTCTGAGGTTGATTTAGCTCATTCTACGCTAACAAGGTTAAGGGACGAAGAAAGTGCATTATTTGAGTGCTTATCCACCGGAAAGAGTGAAATCAAAAGAATGGTTGTTGAGATTGAGGAATATGAGAAAAGACATCGTGAAATATCTTACTCAATTCGAGAGCTTTCGCAACATCAAATCAACAAGGTTACAGCTTTTGGTGGTGATAGAGTTATTAACCTGTTACGAGCTATTGAGACACAGTGCCATAGATTCCAACAGCCACCAATTGGTCCTATTGGTGCCCATGTGAACTTGGTTAATGGTGACACATGGGCTCCTGCAGTGGATAATGCTCTTGGGAAGTTGCTCAATGCTTTCATTGTTACAAATCATAGAGATTTTCTTCTTTTGAGAGGTTGTGCTAAGGAAGCTAACTACAAGAACCTTCAAATTATCATATACGACTTTTCAAGACCAAGGTTAAACATACCAACTCACATGCTTCCTCAAACAAGGCACCCTACGACTCTTTCAGTTATCCATTCCGAAAATCCTACAGTCATTAATGTCTTGGTGGATATGGGTAGTGCTGAGAGACAAGTGCTTGTTAAGGACTACGACGTGGGTAAAGCTGTTGCATTTGAACAGAAGATCACAAATCTGAAGGAAGTCCACACTTTAGATGGCTATAAAATGTTTAAGCGCGGTTCAGTTCAGACAATTCTCCCTCCGCCTAAGTGGCGCAAAACTGGGCGCCTTTGTAGTTCTTATGATGATCAAATTAACGGTCTTGAGAAAGATGCATCAAAATTAAAAGAAGAAAGTTATCAATGTAGGAGGAAGAAGAGAATTGCAGAAGAAGAACTTGGCCCACTTGAAGGCAAGTTGAACAGTACAAAGAAAAGGCGTGAGAGTGCAGAACGCATTTTGATGTCTAAGAATTTAATGCTGGAAGATTTGAAGAACTCTCGTGCTGCAGAAGAAAATACTTCTACAGCATCGTCAGTTGATGAGCTTCACGGAGAAATTTCTAAAGTCCAGGAGGAGATACAAGAAAGTGAGATATTGTTGGAAAGGCTGAGAGTCAAGGCGAATGAAGCAAAAACTAAGGCCAAAGATCTTAAACTATCTTTTGAGAATCTCTGTGAGTCAGCAAAAGGGGACATTGATGCATTTGAAGAGGCAGAAGGAGATCTGTTGCAGATAGAACGAGATCTAAATTCTGCAGAAAAGGAGAAGCATCATTATGAAGTTATTATGGCTAACAAGGTTCTTCCCGATATCACAGTAGCAGAGCGAGAATATCAGGATCTTGAAAGCCTCAGAGAGAAAAATTACAATAAAGCTTCTATTATTTGTCTGGAAAGTGACATTGAAGCTTCAAGCAATTCAGATGGAAGCATGCCTGAACAATTAAGTGCTCACTTAACTAGACTAAAAAAGCAACTTCAAAATGAAAGCCAGCGATTTTCTGATTCTATAGATGACTTGAGAATGAAATATGAGAAAAAAGAACCTACAATCTTGAGAAAAAGGCAGACTTATAAAGGCTTTCGAGAAAAATTGAATGCATGCGAGAAAGCGCTCGATCAGCGGTGGGGCAAGTTTCAAAGAAATGCAAATCTTTTGAAGCGGCAATTGACTTGGCAATTTAATGGTCATTTAAGAAAGAAAGGGATCAGTGGTCATATTAAAGTTAGTTATGAAGAAAAGACGTTGGCAGTTGAGGTGAAGATGCCCCAGGATGCATCGAGCAGTACTGTTCGTGACACTAGAGGACTTTCAGGTGGAGAACGATCATTTTCAACTTTATGTTTTGCATTAGCGCTTCACGAAATGACCGAGGCTCCATTTCGAGCGATGGATGAGTTTGATGTATTTATGGATGCAGTTAGTCGTAAAATCAGCTTAGACACTCTTGTCGATTTCGCATTAGCCCAAGGATCTCAATGGATATTTATCACACCTCATGATATCAGCATGGTGAAACAAGGGGAGAGGATTAAAAAGCAGCAAATGGCAGCCCCTAGATCTTGA 3168 39.93 MRDFKEFSAPSSRCGAGIIRSIRLENFMCHSNLEIELGEWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAVVHVQLRNEGEEAFKSEIYGDVVIIERRISEASNSTILKDCQGKRVSSRKDDLREIVEHFNIDVENPCMIMSQDKSREFLHSGNDKDKFQFFFKATLLHQVNDLLKNIFEQLRSANALVDDLEASIKPVEKELSELKGKIKNMEHVEEISQQIEQVSKKLAWSWVYDVDRQLQQQSTKIAKLKDRIPTCQAKIDRQLDRVEKLRKCFSEKKDQIARMMDKTSEVRSMKDELQETLTQATKEKLYLEDEHGREMKHMQKMLQHIRMLEQQVRNIHDQHIRDTQAEESEIEEKLKELQSEVDLAHSTLTRLRDEESALFECLSTGKSEIKRMVVEIEEYEKRHREISYSIRELSQHQINKVTAFGGDRVINLLRAIETQCHRFQQPPIGPIGAHVNLVNGDTWAPAVDNALGKLLNAFIVTNHRDFLLLRGCAKEANYKNLQIIIYDFSRPRLNIPTHMLPQTRHPTTLSVIHSENPTVINVLVDMGSAERQVLVKDYDVGKAVAFEQKITNLKEVHTLDGYKMFKRGSVQTILPPPKWRKTGRLCSSYDDQINGLEKDASKLKEESYQCRRKKRIAEEELGPLEGKLNSTKKRRESAERILMSKNLMLEDLKNSRAAEENTSTASSVDELHGEISKVQEEIQESEILLERLRVKANEAKTKAKDLKLSFENLCESAKGDIDAFEEAEGDLLQIERDLNSAEKEKHHYEVIMANKVLPDITVAEREYQDLESLREKNYNKASIICLESDIEASSNSDGSMPEQLSAHLTRLKKQLQNESQRFSDSIDDLRMKYEKKEPTILRKRQTYKGFREKLNACEKALDQRWGKFQRNANLLKRQLTWQFNGHLRKKGISGHIKVSYEEKTLAVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38470123 38530003 - Bma005147.1 Bma10g01137 90200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01137 1055 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 1055 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bma10g01137 1055 Coils Coil 407 427 - -
Bma10g01137 1055 Coils Coil 769 789 - -
Bma10g01137 1055 Coils Coil 365 399 - -
Bma10g01137 1055 Coils Coil 343 363 - -
Bma10g01137 1055 Coils Coil 192 226 - -
Bma10g01137 1055 Pfam RecF/RecN/SMC N terminal domain 19 1047 IPR003395 -
Bma10g01137 1055 CDD ABC_SMC6_euk 959 1055 - -
Bma10g01137 1055 Coils Coil 315 335 - -
Bma10g01137 1055 Gene3D - 252 448 - -
Bma10g01137 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 1042 IPR027417 -
Bma10g01137 1055 Gene3D - 18 217 IPR027417 -
Bma10g01137 1055 SUPERFAMILY Smc hinge domain 455 615 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bma10g01137 1055 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1055 - -
Bma10g01137 1055 Gene3D - 804 1051 IPR027417 -
Bma10g01137 1055 Coils Coil 713 754 - -
Bma10g01137 1055 Coils Coil 631 651 - -
Bma10g01137 1055 CDD ABC_SMC6_euk 19 173 - -
Bma10g01137 1055 Coils Coil 857 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01137 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1556.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00203 Bma-Chr8:2428464 Bma10g01137 Bma-Chr10:38470123 3.72E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00203 . 35 929 Structural Maintenance of Chromosomes family AT5G15920 64.8 0.0e+00 1120.9
Bma10g01137 . 16 1055 Structural Maintenance of Chromosomes family AT5G07660 61.3 0.0e+00 1211.1
Bma10g01137 . 13 1055 Structural Maintenance of Chromosomes family AT5G61460 64.3 0.0e+00 1274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g01137 Bma_Chr10 FPKM 1.09187 1.295285 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0