Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01147 ATGATGTTGGACGTTAAGGAAAGGATAAATTATTCAATAAGTGAAGAAAATGGCTTTCCGGTGAAGGGTCAAAAATATCCGAGTTGGGTGGTGAACGGCGATCAGAAATTGTTGGCTTCTTCAACTGTGACAGCAAATCTGGTGGTGGCCAAAGACGGGTCTGGGAATTTCACGACTGTTCAGGCAGCAATAGATGCGGCGGGGAAGAGAAGTGGGAGGGGAAGGTTTGTTATATATGTGAAGAGAGGTATTTATCGAGAAAATATTGAAGTTGGAGCCAATAATAATTACATTATGATGGTTGGAGGTGGGATCAAAAAGACAATAATTACAAGTGATAGAAGTGTTGGAAGAGGCTTTACAACCTACAATTCTGCCACTGCTGGAATTGATGGTCTTGGCTTCATAGCACGGGGGATTACATTCATTAATGGAGCCGGTCCAAAAATGGGTCAGGCGGTTGCTCTTAGATCAGCCTCCGATCTCTCCGTTTTCTACCGATGCGCCTTTTATGGGTATCAAGACACCCTTATGGTCCTCTCACAAAGGCAATTCTATAGAGAGTGTTACATCTACGGCACAATTGACTTCATTTTTGGCAATGCAGCTGTAGTCTTTCAAAAATGCATCATCTATGTGAAAAAACCCTTAAAGGGCCAAGTTAACGTGATCACGGCTCAAGGTCGAAATGATCCGAATCAAAATACAGCAATTTCAATCCACAAGTCACAAATTCGAGCCGCTCCCGATCTTAAACCAATGGTTCATGCTTTCAGGACGTACTTGGGCCGACCATGGATGCGCTATTCTCGAACTGTTATTTTGAAAACTTACATGGATAATTTGGTGAGTCCCGTGGGGTGGTTGGCTTGGCATAACAGTAATTTTGCTTTAAGCACTTTGTATTATGGTGAGTATAATAACTTTGGCCCTAGGGCTTCAACCAAGTATAGGGTGAGATGGAAGGGCTTTCACGTAATTACAAGCCCACAAATTGCCTCCCGTTTTACTGTAGGTAGCCTCATTTCCAGCCAGTCGTGGTTGTCGACTACCGGAGTTCCATTCTCAGCTGGACTCTGA 1080 43.61 MMLDVKERINYSISEENGFPVKGQKYPSWVVNGDQKLLASSTVTANLVVAKDGSGNFTTVQAAIDAAGKRSGRGRFVIYVKRGIYRENIEVGANNNYIMMVGGGIKKTIITSDRSVGRGFTTYNSATAGIDGLGFIARGITFINGAGPKMGQAVALRSASDLSVFYRCAFYGYQDTLMVLSQRQFYRECYIYGTIDFIFGNAAVVFQKCIIYVKKPLKGQVNVITAQGRNDPNQNTAISIHKSQIRAAPDLKPMVHAFRTYLGRPWMRYSRTVILKTYMDNLVSPVGWLAWHNSNFALSTLYYGEYNNFGPRASTKYRVRWKGFHVITSPQIASRFTVGSLISSQSWLSTTGVPFSAGL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39051726 39052898 - Bma005165.1 Bma10g01147 90210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01147 359 ProSitePatterns Pectinesterase signature 1. 72 91 IPR018040 -
Bma10g01147 359 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
Bma10g01147 359 Gene3D - 39 359 IPR012334 -
Bma10g01147 359 Pfam Pectinesterase 46 344 IPR000070 GO:0030599|GO:0042545
Bma10g01147 359 PANTHER PECTINESTERASE 21 358 - -
Bma10g01147 359 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 21 358 - -
Bma10g01147 359 SUPERFAMILY Pectin lyase-like 40 358 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01147 Bma-Chr10:39051726 Bma10g00665 Bma-Chr10:9604969 1.21E-117 dispersed
Bma10g01147 Bma-Chr10:39051726 Bma15g00533 Bma-Chr15:6156349 1.10E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01147 K01051 - qsu:112007203 512.301