Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01166 GGTAAAGCGTTAATGGCGATTAAGGCCTCTTTCAGCAACTTGGCAAACGTGTTGCTAGACTGGAATGATGCTCAGGATAGTGATTTTTGTGCATGGCGGGGAGTTCTTTGCGATAATATCAGTCTCTCGGTTGCGTCTTTAAATCTTTCCAACTTGAACCTGGGTGGGGAAATGTCAGCAGCCATTGGAGATTTGAGAAATTTACAGTCCATTGATCTTCAGGGTAATAAACTGACAGGACAAATTCCCGATGAGATTGGAAATTGCGGATTTCTTGTCCATCTTGATTTATCTGATAATCTGCTTTATGGAGACATACCATTTTCAGTATCCAAGCTGAAGCAACTCGAGTTCCTAAATTTGAAGAACAATCAGTTGAGCGGGCCTATTCCTTCAACCCTTACCCAAATTCCAAACTTGAAGACTCTTGACCTTGCTCGGAACCAGCTGACTGGTGAGATTCCCAGATTAATATATTGGAATGAAGTTCTACAATACCTTGGTCTACGAGGCAATTATTTGACGGGAACGTTATCCCCTGATATTTGCCAACTTACAGGCTTGTGGTACTTTGATGTACGAAGCAATAACCTTACCGGCACCATACCAGACAGCATTGGGAACTGCACGAGTTTTGAAATTTTGGATATTTCTTACAACCAGATATCTGGGGTGATTCCTTACAACATTGGTTTTTTACAAGTCGCTACTCTATCCCTCCAAGGAAATAGATTGACTGGGAAGATACCTGAGGTGATTGGTTTGATGCAGGCTCTTGCTGTCCTGGATTTGAGTGAGAATGAGCTAGAAGGGCCTATTCCACCAATTCTTGGCAATTTGTCTTATACTGGCAAACTATACCTCCATGGAAACAAGCTGAGTGGTCCAATTCCTCCTGAGCTGGGCAATATGTCTAAACTAAGCTACTTGCAATTAAATGACAATCAACTGGTTGGGAAAATTCCAGCTGAGCTTGGCAAACTTGATCAATTGTTTGAATTGAACTTAGCCACTAATTCCCTTGACGGTCTGATACCTCATAATATAAGCTCCTGCACGGCCTTGAATCAATTCAATGTTCATGGTAATCACCTCAGTGGACCTATCCCTTCTGGGTTTCAGAATCTAGAAAGCTTAACATACTTAAATCTTTCGGCTAACAATTTCCAGGGAAGGATACCAGTTGAACTAGGACGCATAATAAATCTTGACACACTGGATCTTTCGAGCAACAATTTTACTGGTCACATACCAGCTTCAGTTGGTGATTTGGAGCATCTTCTTACCCTAAATTTGAGTAAAAATCTTCTTGGAGGGGCATTGCCTGCAGAATTCGGAAATCTCAGAAGTATACAAATCATTGATATGTCGTATAATATTCTCTCTGGAAGAATTCCTTCCGAATTTGGTCAGTTACAGAATCTTATGCAACTGATTCTGAATGATAACAACTTGCAAGGAAAAATTCCAGATCAGCTGACAAACTGCTTCAGCCTTGTTGTTTTGAATGTGTCTTTCAACAATTTATCTGGAGTCATTCCTCCGATGAACAACTTCTCGAGATTTTCTCCCGACAGCTTTTTTGGAAATCCTATGTTATGTGGCAATTGGCTGGGTTCAAGCTGTGGTCCTTATTATCCAAAATCTAGAGCAATATTCTCTCGAACTGCAGTTGTGTGTGTGACAATCGGCTTCATCGTGCTCTTGGTGATGGTGATTGTTGCAGTTTACAAATCCAACCAACCGAACCATTTTATGAAGAGTCCTCCTAAGCTTGTAGTTCTTCAGATGGACATGGCAATTCACACCTACGATGATATAATGAGAGTCACTGAGAATCTGAGTGAGAAGTACATTATAGGATATGGTGCCTCGAGTACAGTGTATAAATGCGTATTGAAGAATTGTCGTCCTATTGCAATTAAGCGACTCTACAATCAGTATCAGCACAATTTGCGAGAGTTTGAGACGGAGCTCGAAACAGTCGGGAGTATAAGGCACAGAAACCTTGTTAGCTTGCATGGTTATTCCTTATCTCCCTTTGGAAATCTTCTGTTCTACGACTACATGGAAAATGGATCTTTGTGGGATCTTCTTCATGGACCATCGAAGAAGGTAAAACTGGATTGGGAAGCGCGGTTGAAGATAGCCGTGGGAGCTGCACAAGGACTAGCTTATCTACATCATGATTGCAACCCTAGGATAATTCACCGAGATATTAAATCCTCAAATATCTTGGTGGACGAGAATTTTGATGCCCATCTTTCCGATTTTGGAATTGCCAAATCCATCCCCACTGCAAAAACCCATGCCTCGACTTATGTGCTTGGGACAATTGGTTATATCGATCCGGAATATGCTCGAACGTCTCGTCTCAATGAAAAATCTGACGTCTACAGCTTTGGAATTGTACTTCTCGAGCTACTTACTGGAAAAAAGGCAGTGGACAATGAATCTAACTTGCATCAAGTGATAATGTCTAAGGCGGATAATAATACTGTCATGGAGGCAATTGATCCTGAGGTTTCTGTCACTTGCATGGATTTATCTCATGTTAGAAAGACCTTTCAACTTGCCCTTCTATGCACGAAGAGGGCCCCATCGGAGAGACCAACAATGCACGAGGTGGCGAGGGTTCTGGTTTCGCTTCTTCCAGCTCCACCGGAGAAAGTGATAGATTATGCAAAATCTGTGATCGTCAAGGGACAACAGCAGATGAGATTCTCGCCGCCGCTGTTTGAACCGGAGAAGAGCTCCTCCGCTGCACAATGGTTTGTTCGATTTGGTGAAGTTATGTCTAAAAACGACCTTTGA 2814 42.08 GKALMAIKASFSNLANVLLDWNDAQDSDFCAWRGVLCDNISLSVASLNLSNLNLGGEMSAAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGFLVHLDLSDNLLYGDIPFSVSKLKQLEFLNLKNNQLSGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNYLTGTLSPDICQLTGLWYFDVRSNNLTGTIPDSIGNCTSFEILDISYNQISGVIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLSGPIPPELGNMSKLSYLQLNDNQLVGKIPAELGKLDQLFELNLATNSLDGLIPHNISSCTALNQFNVHGNHLSGPIPSGFQNLESLTYLNLSANNFQGRIPVELGRIINLDTLDLSSNNFTGHIPASVGDLEHLLTLNLSKNLLGGALPAEFGNLRSIQIIDMSYNILSGRIPSEFGQLQNLMQLILNDNNLQGKIPDQLTNCFSLVVLNVSFNNLSGVIPPMNNFSRFSPDSFFGNPMLCGNWLGSSCGPYYPKSRAIFSRTAVVCVTIGFIVLLVMVIVAVYKSNQPNHFMKSPPKLVVLQMDMAIHTYDDIMRVTENLSEKYIIGYGASSTVYKCVLKNCRPIAIKRLYNQYQHNLREFETELETVGSIRHRNLVSLHGYSLSPFGNLLFYDYMENGSLWDLLHGPSKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDIKSSNILVDENFDAHLSDFGIAKSIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQVIMSKADNNTVMEAIDPEVSVTCMDLSHVRKTFQLALLCTKRAPSERPTMHEVARVLVSLLPAPPEKVIDYAKSVIVKGQQQMRFSPPLFEPEKSSSAAQWFVRFGEVMSKNDL 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40786128 40791262 + Bma005203.1 Bma10g01166 90229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01166 937 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 1 902 - -
Bma10g01166 937 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 902 - -
Bma10g01166 937 Gene3D Transferase(Phosphotransferase) domain 1 690 897 - -
Bma10g01166 937 ProSiteProfiles Leucine-rich repeat profile. 139 161 IPR001611 GO:0005515
Bma10g01166 937 Pfam Leucine rich repeat N-terminal domain 2 38 IPR013210 -
Bma10g01166 937 Pfam Protein kinase domain 617 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g01166 937 SUPERFAMILY L domain-like 230 534 - -
Bma10g01166 937 CDD STKc_IRAK 620 880 - -
Bma10g01166 937 Gene3D Ribonuclease Inhibitor 1 159 IPR032675 -
Bma10g01166 937 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Bma10g01166 937 Pfam Leucine rich repeat 402 459 IPR001611 GO:0005515
Bma10g01166 937 Pfam Leucine Rich repeat 208 224 IPR001611 GO:0005515
Bma10g01166 937 SMART serkin_6 614 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g01166 937 Gene3D Ribonuclease Inhibitor 160 269 IPR032675 -
Bma10g01166 937 SUPERFAMILY Protein kinase-like (PK-like) 593 880 IPR011009 -
Bma10g01166 937 SUPERFAMILY L domain-like 3 281 - -
Bma10g01166 937 ProSiteProfiles Protein kinase domain profile. 614 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g01166 937 Pfam Leucine Rich Repeat 67 89 IPR001611 GO:0005515
Bma10g01166 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Bma10g01166 937 SMART LRR_typ_2 113 136 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 472 496 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 137 161 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 65 89 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 304 328 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 185 209 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 376 400 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 256 280 IPR003591 -
Bma10g01166 937 SMART LRR_typ_2 424 447 IPR003591 -
Bma10g01166 937 Gene3D Phosphorylase Kinase; domain 1 577 689 - -
Bma10g01166 937 Gene3D Ribonuclease Inhibitor 270 545 IPR032675 -
Bma10g01166 937 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00111 Bma-Chr4:880559 Bma10g01166 Bma-Chr10:40786128 0 dispersed
Bma08g01055 Bma-Chr8:49657352 Bma10g01166 Bma-Chr10:40786128 2.32E-122 dispersed
Bma10g00358 Bma-Chr10:3355467 Bma10g01166 Bma-Chr10:40786128 8.56E-78 dispersed
Bma10g00505 Bma-Chr10:5914859 Bma10g01166 Bma-Chr10:40786128 1.07E-07 dispersed
Bma10g01166 Bma-Chr10:40786128 Bma04g01039 Bma-Chr4:18724369 2.47E-79 dispersed
Bma10g01166 Bma-Chr10:40786128 Bma01g02192 Bma-Chr1:78803560 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66754 PF00069 Pkinase 4.50E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01166 K20718 - vvi:100256609 1593.94