Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01171 GTTAGCAAGAGAATGTTGAGCGATGATGACAAGGATTTGTCGACGAAATGCCGTGAGAGGCGGCGCCGACGAATAGAGATGAGGCGTGTGGCGACTGCATCAATGGCGAGCTCATCTCATGCTGGGAGTCGAAGCGAGAGGGAGAGTCATTTAGAAGATCAGTCGGGCTCTAAACTCAAGCGTATTCGAGTAGGGAACTCGTCGTCTTCTTCCTTCGCCGACGACGCGGAGGACGATTCGGCAACGAAAGAGATGGTAGATGTCGTCTCGATGGTGGAGCCAGAGTTCGGGACTATGTCTATTTCCGGTAGGTCAAGAGAGATGGAGGACGCGATATCTGTACGAACAAGACTGTGTCAGCCGGCGATTTGCCGGCGGCAACCGATGCATTTCTTCGCAGTGTACGATGGACACGGAGGAGCTCACGTGGCGGAACTTTGTAGGGAAAGGATGGAGTCTTTGGTGGAGGAGGAGCTGACGACGGCTGGAAGTACGCGCTCCGAGACTGCGAGTGGAGGTGAGGAGGATGAGGAGGAATGGAAGAGGGTGCTGAAGAAGAGCTTCGAGAGGATGGACGAGGTGGCTCTGAGCACGTGCGCCTGTGGGAGCGTTGGGGGGCACTGCGGGTGCCTTCCTATGGAGGTCGCTCTCGGTGGGTCCACTGCCGTAGTTGCCATACTTACCCCCGAGCACATCGTCGTTGCAAACTGCGGCGACTCACGTGCCGTCCTTTGCCGTGGCAAAAGAGCAGTCCCTTTGTCCAATGATCACAAGCCGGATAGACCGGACGAATTAGCGAGAATCGAAGCGGCTGGCGGACGAGTTATTTTTGTCAACGGAGCTCGCGTTGAAGGCATTCTTGCTATGTCCCGAGCCATAGGGGACAAGTATTTAAAATCGGTCGTGATATCTGAGCCTGAAATCACATTCACAAAAAGGGAATCTGAAGATGAGTGTTTGATTCTTGCAAGTGATGGCTTATGGGACGTTATATCGAGCGACTTAGCCTGTGAAGTTGCCTCCAAGTGTCTCCAAGAAGGCGCTCCCACGACTTCTACTATCGATCTCAACGCATCTCCTCAGCCTAGAAACGAAGAAACCGAAGCGATTTATCCGTCCAGAAGTGCTCTAGCCGCTGCATTGCTCACTCGTCTCGCTTTGGGTCGGAAAAGTTGTGATAACATTAGTGTCATCGTCATCGATTTGAAGAAAAGTTGA 1218 53.04 VSKRMLSDDDKDLSTKCRERRRRRIEMRRVATASMASSSHAGSRSERESHLEDQSGSKLKRIRVGNSSSSSFADDAEDDSATKEMVDVVSMVEPEFGTMSISGRSREMEDAISVRTRLCQPAICRRQPMHFFAVYDGHGGAHVAELCRERMESLVEEELTTAGSTRSETASGGEEDEEEWKRVLKKSFERMDEVALSTCACGSVGGHCGCLPMEVALGGSTAVVAILTPEHIVVANCGDSRAVLCRGKRAVPLSNDHKPDRPDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTKRESEDECLILASDGLWDVISSDLACEVASKCLQEGAPTTSTIDLNASPQPRNEETEAIYPSRSALAAALLTRLALGRKSCDNISVIVIDLKKS 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41120187 41122471 + Bma005212.1 Bma10g01171 90234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01171 405 CDD PP2Cc 96 402 IPR001932 -
Bma10g01171 405 MobiDBLite consensus disorder prediction 1 20 - -
Bma10g01171 405 MobiDBLite consensus disorder prediction 43 59 - -
Bma10g01171 405 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Bma10g01171 405 MobiDBLite consensus disorder prediction 60 75 - -
Bma10g01171 405 Pfam Protein phosphatase 2C 96 354 IPR001932 -
Bma10g01171 405 ProSiteProfiles PPM-type phosphatase domain profile. 95 402 IPR001932 -
Bma10g01171 405 Gene3D - 88 405 IPR036457 -
Bma10g01171 405 SUPERFAMILY PP2C-like 95 403 IPR036457 -
Bma10g01171 405 PANTHER ALPHABET, ISOFORM E-RELATED 36 404 - -
Bma10g01171 405 MobiDBLite consensus disorder prediction 1 81 - -
Bma10g01171 405 MobiDBLite consensus disorder prediction 157 178 - -
Bma10g01171 405 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 36 404 - -
Bma10g01171 405 SMART PP2C_4 78 400 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00142 Bma-Chr3:1069355 Bma10g01171 Bma-Chr10:41120187 5.32E-89 dispersed
Bma07g00086 Bma-Chr7:1652327 Bma10g01171 Bma-Chr10:41120187 1.26E-82 dispersed
Bma10g01171 Bma-Chr10:41120187 Bma11g00104 Bma-Chr11:1042831 1.10E-76 dispersed
Bma10g01171 Bma-Chr10:41120187 Bma14g00520 Bma-Chr14:5779888 2.57E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01171 K14497 - zju:107414392 499.59