Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01180 ATGGTGAGAGGGAAAATCCAGATGAAGAGAATCGAAGATGCGACGAGTCGGCAAGTGACTTTCAGTAAACGACGAAACGGGCTGTTGAAGAAGGCCTATGAACTCTCTGTTCTCTGCGATGCTGAGGTTGCTCTAATCATTTTCTCTCAGAAAGGACGGATTTTTGAGTTTTCAAGCTCTGACATGCAAAGAATTGTCGAACGATACCGAAAATATCAACAAAACAGACTAACTCAGAAGATTGACGTGGAGCAACGCAATCAGCAACTGAAACATGAAACCGCAACCATGGCAAAGAAGATTGAGCTTCTTGAAGCTTCTCTAAGGAAGCTTATGGGAACTGGTTTAGGTTCATGTTCCTTCGAAGAACTCGGAGAAATTGGCAACCAACTCGAGCAGAGTTTACACCGAATAAGAGCTCAAAAGGTACGTCTCGACCCAAACCGAGCACTAGGGTTAATTTATTGTCAGGGATGGTAA 480 43.75 MVRGKIQMKRIEDATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRIFEFSSSDMQRIVERYRKYQQNRLTQKIDVEQRNQQLKHETATMAKKIELLEASLRKLMGTGLGSCSFEELGEIGNQLEQSLHRIRAQKVRLDPNRALGLIYCQGW 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41770526 41773330 - Bma005233.1 Bma10g01180 90243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01180 159 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bma10g01180 159 ProSiteProfiles K-box domain profile. 87 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma10g01180 159 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Bma10g01180 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma10g01180 159 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma10g01180 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma10g01180 159 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma10g01180 159 PANTHER MADS-BOX PROTEIN SOC1 1 144 - -
Bma10g01180 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma10g01180 159 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma10g01180 159 Pfam K-box region 85 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma10g01180 159 PANTHER MADS BOX PROTEIN 1 144 - -
Bma10g01180 159 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Bma10g01180 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00348 Bma10g01180 CCT
Bma08g00348 Bma10g01180 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00349 Bma-Chr8:6699243 Bma10g01180 Bma-Chr10:41770526 2.16E-62 dispersed
Bma10g01180 Bma-Chr10:41770526 Bma01g02062 Bma-Chr1:76049137 9.70E-43 dispersed
Bma10g01180 Bma-Chr10:41770526 Bma12g01129 Bma-Chr12:43675318 5.23E-34 wgd
Bma10g01180 Bma-Chr10:41770526 Bma08g00348 Bma-Chr8:6414917 1.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57975 PF01486 K-box 4.70E-16 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01180 - - sind:105179249 197.593