Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g01190 | ATGTTCTTCATTGGGTTGCATGATTTTCTGCCGGAAACTTCGAGCTCCGACAGCGGTAGCTCTCCGCTGGCGAATTTTTCAGACGAGGAGGTAATGTTGGCATCGGAGCATCCGAAGAGGAAGACGGGGAGGAAGCAGTTTAAGAAGACGAGACATTCGGTTTACAGGGGAGTGAGGAGAAGAAATTCCGGAAAGTGGGTGAGTGAGGTGAGAGAGCCCAATAAGAAGTCCAGGATTTGGTTGGGGACTTTTCCGACCGCCGTGATGGCAGCTAGGACCCACGACGTGGCCGCACTGGCATTGAGGGGCCGGTCAGCCTGTTTCAATTTGGGCGATTCACTGTGGCGGCTGCCAGTGCCAACTAAACACATCCAAAAGGCGGCAGCAAAGGCGGCAGTTATGTTCCAGCGGTTGGAGTCTGATGGGTTGAGTTTAAATGATTCAACGCCACTGATATAA | 459 | 52.51 | MFFIGLHDFLPETSSSDSGSSPLANFSDEEVMLASEHPKRKTGRKQFKKTRHSVYRGVRRRNSGKWVSEVREPNKKSRIWLGTFPTAVMAARTHDVAALALRGRSACFNLGDSLWRLPVPTKHIQKAAAKAAVMFQRLESDGLSLNDSTPLI | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 42087308 | 42087779 | - | Bma005250.1 | Bma10g01190 | 90253 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g01190 | 152 | ProSiteProfiles | AP2/ERF domain profile. | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01190 | 152 | CDD | AP2 | 53 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01190 | 152 | SMART | rav1_2 | 54 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01190 | 152 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 13 | 142 | IPR045277 | GO:0003700 | |
Bma10g01190 | 152 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 13 | 142 | - | - | |
Bma10g01190 | 152 | SUPERFAMILY | DNA-binding domain | 53 | 112 | IPR016177 | GO:0003677 | |
Bma10g01190 | 152 | Gene3D | AP2/ERF domain | 54 | 111 | IPR036955 | GO:0003700|GO:0006355 | |
Bma10g01190 | 152 | PRINTS | Ethylene responsive element binding protein signature | 55 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01190 | 152 | PRINTS | Ethylene responsive element binding protein signature | 77 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Bma10g01190 | 152 | Pfam | AP2 domain | 53 | 103 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma10g01190 | Bma12g01131 | CCT | |
Bma10g01190 | Bma12g01131 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g01190 | Bma-Chr10:42087308 | Bma14g02069 | Bma-Chr14:44058205 | 4.29E-65 | dispersed | |
Bma10g01190 | Bma-Chr10:42087308 | Bma12g01131 | Bma-Chr12:43700609 | 3.39E-53 | wgd | |
Bma10g01190 | Bma-Chr10:42087308 | Bma08g00345 | Bma-Chr8:6219460 | 1.46E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57977 | PF00847 | AP2 | 6.20E-13 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g01190 | - | K09286 | rcu:8258303 | 192.971 |