Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01190 ATGTTCTTCATTGGGTTGCATGATTTTCTGCCGGAAACTTCGAGCTCCGACAGCGGTAGCTCTCCGCTGGCGAATTTTTCAGACGAGGAGGTAATGTTGGCATCGGAGCATCCGAAGAGGAAGACGGGGAGGAAGCAGTTTAAGAAGACGAGACATTCGGTTTACAGGGGAGTGAGGAGAAGAAATTCCGGAAAGTGGGTGAGTGAGGTGAGAGAGCCCAATAAGAAGTCCAGGATTTGGTTGGGGACTTTTCCGACCGCCGTGATGGCAGCTAGGACCCACGACGTGGCCGCACTGGCATTGAGGGGCCGGTCAGCCTGTTTCAATTTGGGCGATTCACTGTGGCGGCTGCCAGTGCCAACTAAACACATCCAAAAGGCGGCAGCAAAGGCGGCAGTTATGTTCCAGCGGTTGGAGTCTGATGGGTTGAGTTTAAATGATTCAACGCCACTGATATAA 459 52.51 MFFIGLHDFLPETSSSDSGSSPLANFSDEEVMLASEHPKRKTGRKQFKKTRHSVYRGVRRRNSGKWVSEVREPNKKSRIWLGTFPTAVMAARTHDVAALALRGRSACFNLGDSLWRLPVPTKHIQKAAAKAAVMFQRLESDGLSLNDSTPLI 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42087308 42087779 - Bma005250.1 Bma10g01190 90253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01190 152 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Bma10g01190 152 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Bma10g01190 152 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Bma10g01190 152 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 142 IPR045277 GO:0003700
Bma10g01190 152 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 13 142 - -
Bma10g01190 152 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Bma10g01190 152 Gene3D AP2/ERF domain 54 111 IPR036955 GO:0003700|GO:0006355
Bma10g01190 152 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Bma10g01190 152 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Bma10g01190 152 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g01190 Bma12g01131 CCT
Bma10g01190 Bma12g01131 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01190 Bma-Chr10:42087308 Bma14g02069 Bma-Chr14:44058205 4.29E-65 dispersed
Bma10g01190 Bma-Chr10:42087308 Bma12g01131 Bma-Chr12:43700609 3.39E-53 wgd
Bma10g01190 Bma-Chr10:42087308 Bma08g00345 Bma-Chr8:6219460 1.46E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57977 PF00847 AP2 6.20E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01190 - K09286 rcu:8258303 192.971