Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01198 ATGATGGTTCTACTTCATGCATATGTGGAAAATGATGCCATGGTTCTGTTTCAAATATACGTGCAGGGATTTAAACCTGTTGAAAGAATAGATCTTGTTGGTGGGTTGCCAGCGGCTGCCTCCTCATCTCAGCATCACAGTCCATATGCTTCCTTCATTCCGAGCCCCAGTTCTTCCTCTTTTCCTAGTCCAGTCTCATCTTCGTATACTGCTGCTAATCCTACAACGGATGGAAATTCCCTCATCCCTTGGCTTAAAAATCTTTCATCTGCCTCATCATCAGCCTCCTCTTCCAAGCGCCCCCACCTCTATATCCATGGAGGCTCTGTCAGTGCTCCAGTTACCCCACCTTTGAGCTCACCAAGTGCCAAAACACCCCGAATTAGAGCCAATTGGGAAGAACAAACAACATCCCCTGGTTGGACTGCTCGACAATACTCGATCCTACCATCTTCTACTCTACCAAGCCCTCCGTCTTCTACTCCACCAAGCCCTGGCCGCCAGATTTTTCCGGATCCAGAATGGTTTTCTGGAATTAGAATTCCTTACAGCGGACCAACTTCTCCAACGTTCAGCCTTGTCTCTTCTAACCCATTTGGCTTTAAGGAAGAGGCGTTAACTGGTGGTGGATCGCGCATGTGGACTCCCGGGCAAAGTGGGACATGCTCTCCGGCCATTGCAGCAGGCTCTGATCACACTGCAGACATTCCGATGTCTGAACTTATTTCAGATGAGTTTGCATTTGGAAGCAATGCAGCTGGAATAGTTAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATCTCGAGCTGACCCTTGGGAGTTCAAGGACAAGGTGA 852 48.47 MMVLLHAYVENDAMVLFQIYVQGFKPVERIDLVGGLPAAASSSQHHSPYASFIPSPSSSSFPSPVSSSYTAANPTTDGNSLIPWLKNLSSASSSASSSKRPHLYIHGGSVSAPVTPPLSSPSAKTPRIRANWEEQTTSPGWTARQYSILPSSTLPSPPSSTPPSPGRQIFPDPEWFSGIRIPYSGPTSPTFSLVSSNPFGFKEEALTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSELISDEFAFGSNAAGIVKPWEGERIHEDSGSDDLELTLGSSRTR 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42537550 42538490 - Bma005263.1 Bma10g01198 90261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01198 283 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 23 157 - -
Bma10g01198 283 MobiDBLite consensus disorder prediction 113 154 - -
Bma10g01198 283 MobiDBLite consensus disorder prediction 108 168 - -
Bma10g01198 283 Pfam BES1/BZR1 plant transcription factor, N-terminal 20 89 IPR008540 -
Bma10g01198 283 MobiDBLite consensus disorder prediction 263 283 - -
Bma10g01198 283 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 158 283 - -
Bma10g01198 283 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 23 157 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bma10g01198 283 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 158 283 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01198 - - - tcc:18594295 390.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01198 Bma-Chr10:42537550 Bma13g00924 Bma-Chr13:39682631 2.35E-126 dispersed
Bma10g01198 Bma-Chr10:42537550 Bma10g00457 Bma-Chr10:5150979 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02306 BCT 33 318 BZR Transcription Factor Family AT1G75080 64.9 5.2e-89 324.7
Bma04g00201 BCT 32 316 BZR Transcription Factor Family AT1G75080 66.0 1.7e-87 319.7
Bma09g00060 . 28 307 BZR Transcription Factor Family AT1G75080 57.1 4.6e-77 285.0
Bma01g02306 BCT 33 316 BZR Transcription Factor Family AT1G19350 64.0 1.8e-89 326.2
Bma04g00201 BCT 32 313 BZR Transcription Factor Family AT1G19350 63.2 1.5e-83 306.6
Bma09g00060 . 28 306 BZR Transcription Factor Family AT1G19350 58.6 7.0e-78 287.7
Bma09g00060 . 2 308 BZR Transcription Factor Family AT3G50750 57.2 2.9e-77 285.4
Bma01g02306 BCT 1 313 BZR Transcription Factor Family AT3G50750 51.1 6.4e-61 231.1
Bma04g00201 BCT 3 310 BZR Transcription Factor Family AT3G50750 50.3 1.8e-55 213.0
Bma14g00977 . 77 328 BZR Transcription Factor Family AT4G18890 55.3 1.2e-54 209.9
Bma10g00457 . 123 333 BZR Transcription Factor Family AT4G18890 50.9 4.1e-44 174.9
Bma14g00977 . 1 328 BZR Transcription Factor Family AT1G78700 70.3 6.5e-113 404.1
Bma10g00457 . 1 333 BZR Transcription Factor Family AT1G78700 66.8 1.2e-106 383.3
Bma13g00924 . 1 326 BZR Transcription Factor Family AT1G78700 67.1 4.5e-98 354.8
Bma10g01198 . 25 283 BZR Transcription Factor Family AT1G78700 60.1 7.8e-66 247.7
Bma09g00060 . 28 207 BZR Transcription Factor Family AT4G36780 72.2 1.4e-60 229.9
Bma01g02306 BCT 33 212 BZR Transcription Factor Family AT4G36780 57.3 6.6e-39 157.9
Bma04g00201 BCT 32 210 BZR Transcription Factor Family AT4G36780 56.5 5.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57978 PF05687 BES1_N 4.90E-07 No_clan Bma TF