Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01222 ATGAATTCAATATCTCGATTGGGTCTTCAATTTTGTCATAAAGTTTCAAAGTTTTACACGGTTTCTCGAAAATTATGCTACATACGCTTTGACGGTGATAAAGGAGATGATGTTGGGAGTTTTGAGGAATCAGTAAAAAGGATGTGGAAAAGTTATGATTTTGATTCTGGTGTTATTGACACACTCAATAAGGACGACTATGAGAGTTGTGAAGACGAAAATTCCTCGATTGGAAAGGGTATTTTTCAGGATGTGAGAGTTCATGCTAGAAGGGTTCTTGAAATTCTAAGACAAGATGGTCCTGGTTTTGACACGAAATCAGCTTTATCTGAGCTGCAAATAAGGGTCTCAGGGCCTCTTGTTAGGGAAGTTCTTTTGGGGATTTTGCGAAGCATAAATTATGTGGATAAAACCCGTTGTGCACAATTGGCCTACAAGTTTTTCTTATGGTCTGGCGAGCAGAACAGTTATAGGCACACAGTTAGTTCATATCATTTAATTATGAAGATATTTGCTCAGTGTGAAGAATTTAAGGCAATGTGGAGGCTAGTGGATGAGATGGCTCAGAATGGGTACCCTATGACGGCACGTACGTTTAACATTTTAATATGTACTTGTGGAGAGGCAGGTCTAGCTAGAAAAGTTGTGGAAAGGTTTATAAAATCCAAAACATTCAGTTATAGACCATTTAAACACTCTTACAATGCTATTTTGCATTCACTTATTGGTATAAAACAGTACAAGTTGATTGAATGGGTCTACCGGCAGATGTTGGTTGAGGGTCATGATCCTGACATTCTGACTTATAATATACTGATGTGTGCGAAGTTTAAGTTGGGAAAGTTAACCGAATTTCACTCGCTGTTAGATGAAATGGGTCAGAGTGGATTTTCTCCAGATCACCATACATATAACATTCTCCTTCATGTTCTTGGAAGAGGGGACAAACCACTCGCAGCTCTTAATCTTTTGAATCACATGAAGGAATCAGGATTTGATCCTAGTGTTCTTCACTTCACGACATTGATTGATGGACTTAGTCGGGCTGGAAATTTGGAAGCATGCAAATATTTTTTCGATGAAATGAGAAAAAATGGTTGCAGTCCAGATGTCGTTTGCTACACTGTAATGATAACGGGGTATGTCGCTGCTGAGGAGCCTGAGAAGGCTCAGGAATATTTTGCTGAAATGATAATGCAAGGACAGCTACCAAACGTATTTACTTATAACTCGATGATTCGTGGGTTTTGCGTGGCGGGTAAATTTGAGGAGGCATTATCTATGCTCAAGGAAATGGAATCCAGCGGGTGTAATCCGAATTTCGTTATTTACAGTACTCTTGTGAGTAATTTACGAAATGCAGGGAAGCTATCTGAGGCTCACGATGTGATCCGGCATATGATGGGGAAAGGGCAATATGTTCATCTAGCCCCGAGGTTAAAGAGATACAGGCGATGCTAA 1461 39.7 MNSISRLGLQFCHKVSKFYTVSRKLCYIRFDGDKGDDVGSFEESVKRMWKSYDFDSGVIDTLNKDDYESCEDENSSIGKGIFQDVRVHARRVLEILRQDGPGFDTKSALSELQIRVSGPLVREVLLGILRSINYVDKTRCAQLAYKFFLWSGEQNSYRHTVSSYHLIMKIFAQCEEFKAMWRLVDEMAQNGYPMTARTFNILICTCGEAGLARKVVERFIKSKTFSYRPFKHSYNAILHSLIGIKQYKLIEWVYRQMLVEGHDPDILTYNILMCAKFKLGKLTEFHSLLDEMGQSGFSPDHHTYNILLHVLGRGDKPLAALNLLNHMKESGFDPSVLHFTTLIDGLSRAGNLEACKYFFDEMRKNGCSPDVVCYTVMITGYVAAEEPEKAQEYFAEMIMQGQLPNVFTYNSMIRGFCVAGKFEEALSMLKEMESSGCNPNFVIYSTLVSNLRNAGKLSEAHDVIRHMMGKGQYVHLAPRLKRYRRC 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43136186 43137646 + Bma005294.1 Bma10g01222 90285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01222 486 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Bma10g01222 486 TIGRFAM PPR: pentatricopeptide repeat domain 442 471 IPR002885 -
Bma10g01222 486 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Bma10g01222 486 TIGRFAM PPR: pentatricopeptide repeat domain 339 371 IPR002885 -
Bma10g01222 486 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Bma10g01222 486 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Bma10g01222 486 Gene3D Tetratricopeptide repeat domain 329 398 IPR011990 GO:0005515
Bma10g01222 486 Gene3D Tetratricopeptide repeat domain 248 328 IPR011990 GO:0005515
Bma10g01222 486 Gene3D Tetratricopeptide repeat domain 399 470 IPR011990 GO:0005515
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Bma10g01222 486 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 486 - -
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Bma10g01222 486 Pfam PPR repeat family 264 311 IPR002885 -
Bma10g01222 486 Pfam PPR repeat family 369 417 IPR002885 -
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Bma10g01222 486 Pfam PPR repeat 442 471 IPR002885 -
Bma10g01222 486 Pfam PPR repeat 339 367 IPR002885 -
Bma10g01222 486 Gene3D Tetratricopeptide repeat domain 105 241 IPR011990 GO:0005515
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Bma10g01222 486 PANTHER OS10G0506000 PROTEIN 1 486 - -
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Bma10g01222 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01222 - - - qsu:112001594 734.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01222 Bma-Chr10:43136186 Bma14g01939 Bma-Chr14:41352230 4.95E-21 dispersed
Bma10g01222 Bma-Chr10:43136186 Bma05g01007 Bma-Chr5:48538911 2.92E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36