Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01238 ATGGAGACGCCGTTGCTGAACGACGTTGGAGAAGGGGACTATGCGGCGGTGAGGAGCCTGAAGGAGGCGAGGGAGATGACTTGGAAAGAGACGGTGAAGCTATGGAGGATTGGAGGTCCTATTGCTTTCAACATACTTTGTCAGTTTGGAACCAATTCCCTCACTTGTATTTTCGTCGGCCATATCGGAGATATTGAGCTCTCTTCTATCTCCATTTCTCTCTCTGTCATCGGAACTTTCTCCTTCGGATTCCTGCTTGGTATGGGAAGTGCACTAGAGACCCTCTGTGGGCAGGCATTCGGAGCTGGAAAAGTTCACTTACTCGGAATCTACTTGCAAAGATCATGGATAATCTTATTCATCTCCTGCATACTTCTCTTACCTATTTACATCTTCGCCACTCCGATTCTCCTTCTACTCGGACAGGAGAAATCGATCGCCAAATTAGCCGGAAAATTCACGCTCTTAGTAATCCCTCAACTTTTCTCGCTTTCAATCACTTTTCCGACTCAAAAATTCCTGCAGGCTCAGAGCAAAGTGAAAGTGATCGCTTGGATTGGCTTCTTAGCCCTTCTTTTTCATGCGTTTATGTTGTGGCTCTTCATTTATGTGTTCAAATGGAGCACCACCGGTGCAGCCATTGCCTATGATATTACCAACTGGGTGATTGCTTTGGCTCAAGCTATTTATGCTGTGGGGTGGTGTAAAGATGGGTGGAATGGCCTTTCTTGGTCTGCTTTCCGGGAAATTTGGGCTTTCGTTCGGCTCTCCATTGCTTCTGCTGTCATGCTTTGCTTGGAGATTTGGTATATGATGAGCATTATCATACTCACCGGACATCTTGACAACGCCGTTATCGCACAAATGAACACAGTCGATTGGTTTTTTCGTGGTTACTTATCGGAAAAGTTTTGTTTTGGCAGCATGAATCTTAATGGCATTGAAGCCATGTTGTTTATTGGAATCAATGCTGCCATAAGTGTTCGAGTCTCGAACGAGCTCGGTCTCGGCCATGCAAGAGCGGCGAAATATGCAGTCTACGTGACAGTTCTTCAGTCGCTCCTCATTGGAATAGTCTGCATGGTTGTCATTTTGTTGACTAAGAACTACTTCGCTGTCATTTTCACGAGTAGTAAAACCATGCAAGTAGCCGTTTCTCACCTCGCGTTTCTTCTCGGGATCACGATGGTTCTCAACAGTGTACAACCAGTTGTTTCCGGAGTTGCTGTTGGAGGAGGATGGCAAGCTTTGGTTGCCTACATTAATCTTGGATGTTATTACGCCTTTGGCCTCCCCCTCGGATATTTGCTCGGATACAAAGCGAATTTAGGCGTTAAGGGACTTTGGGGAGGAATGATCTGCGGGACTGGTTTACAGACCCTGCTACTCTTGGCTGTACTTTATCGAACAAACTGGAACAAGGAGGTGAGATCGAATTCTGAACGAATGCGGAGATGGGGTGGACAGGACTCCAAAACTGAAGAAATAGTCGATCATGTTTCAATTTTCTGA 1512 45.9 METPLLNDVGEGDYAAVRSLKEAREMTWKETVKLWRIGGPIAFNILCQFGTNSLTCIFVGHIGDIELSSISISLSVIGTFSFGFLLGMGSALETLCGQAFGAGKVHLLGIYLQRSWIILFISCILLLPIYIFATPILLLLGQEKSIAKLAGKFTLLVIPQLFSLSITFPTQKFLQAQSKVKVIAWIGFLALLFHAFMLWLFIYVFKWSTTGAAIAYDITNWVIALAQAIYAVGWCKDGWNGLSWSAFREIWAFVRLSIASAVMLCLEIWYMMSIIILTGHLDNAVIAQMNTVDWFFRGYLSEKFCFGSMNLNGIEAMLFIGINAAISVRVSNELGLGHARAAKYAVYVTVLQSLLIGIVCMVVILLTKNYFAVIFTSSKTMQVAVSHLAFLLGITMVLNSVQPVVSGVAVGGGWQALVAYINLGCYYAFGLPLGYLLGYKANLGVKGLWGGMICGTGLQTLLLLAVLYRTNWNKEVRSNSERMRRWGGQDSKTEEIVDHVSIF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43945856 43948868 - Bma005324.1 Bma10g01238 90301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01238 503 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 483 - -
Bma10g01238 503 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bma10g01238 503 Pfam MatE 309 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bma10g01238 503 PANTHER PROTEIN DETOXIFICATION 12 483 - -
Bma10g01238 503 CDD MATE_eukaryotic 30 477 IPR045069 GO:0042910|GO:1990961
Bma10g01238 503 TIGRFAM matE: MATE efflux family protein 40 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01238 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pvy:116139562 734.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01238 Bma14g02051 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00482 Bma-Chr9:39988693 Bma10g01238 Bma-Chr10:43945856 0 dispersed
Bma10g01238 Bma-Chr10:43945856 Bma14g01809 Bma-Chr14:38740509 2.07E-147 dispersed
Bma02g01052 Bma-Chr2:52117119 Bma10g01238 Bma-Chr10:43945856 0 transposed
Bma10g01238 Bma-Chr10:43945856 Bma14g02051 Bma-Chr14:43862475 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g739 . . . . Bpe03g00145 . Bma10g01238 Bma14g02051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108