Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01241 ATGGCGTCGCAGCTTGCCTTTTTCCATTATCCGGTGACAGTAGGTAAATGTTCATCCTTCTCTTCTCGTGAAATCCCGAGTAGGATCTTGATGAGTGCTTCAATCCTACCACGCGAGCAATCTACATTTTCGTCACCCCCAATTACCAAACTGAGAGACTTTGCGTACTTGAAAAATTCTAAGTATGTTACAAAGAACCTTAGTTCGAGTCGTTCTGTGAAGGTACGATCCCATTCGAGGCTAATTCTCCCTCTGATTTCCCCTCAGGACCACTGGGGCACCTGGACTGTTCTCTTGGCTGGAGGCGCGTTTGGTATCTGGTCAGAGAAGACAAAAATTGGAAGTGCATTAAGTGGTGCACTGGTGAGCACATTGGTGGGACTTGCATTGAGTAACGTGGGGATTATTGCATCTGATGCTCCAGCGTTTTCTATTGTGTTGGAGTATTTGCTCCCATTGGCCGTTCCTTTGTTGTTGTATAGAGCAGATTTGCGTAGAGTGATTAAGTCGACAGGAACCCTTCTACTGGCTTTCTTGTTAGGTTCAGTTGCAACAACTGTGGGAACTGTAGTTGCATATCTTCTAGTTCCAATGAGATCACTTGGTCAAGATAGCTGGAAAATTGCAGCTGCACTTATGGGCAGGCATATTGGCGGAGCTGTCAATTATGTTGCCATTGCCGATGCACTTGCGATTTCACCATCAGTTTTAACTGCTGGACTTGCTGCTGATAATGTGATTTGTGCTGTATATTTTGCAACTTTATTTGGATTAGCATCTAAAGTTCCTCCTGAAGCTATAAAATCATCCACCGAAATGGTCGAAGAGTCTGAGCCCGACGACAAACTTCCTGTCTTACAAACGGCTACAGCCATTGCTGTGTCCTTTGCTATTTGCAAGAGCGGTTCATATCTCACTAAATATCTTGGAATTCCAGGAGGTAGCCTACCTGCAATAACGGCAATTGTCGTGACCTTGGCGACTATATTTCCTAAACAAAGTGGTTATCTAGCCCCAGCTGGCCAGGCCATGGCATTGATATTAATGCAGGTATTTTTCACAGTGGTGGGAGCGAGCGGAAGCATATGGAGTGTCATCAACACAGCACCAAGCATCTTCGTGTTTGCGCTCGTTCAGATTGTCGTCCATCTTGCAGTGATTCTTGGCTTAGGGAAGCTCTTCGGCTTTGATCTCAAGTTGCTGCTTATAGCTTCAAATGCCAATGTTGGAGGCCCTACAACAGCCTGTGGAATGGCCAATGCCAAAGGGTGGAGCTCCATGGTTGTGCCTGGAATTCTAGCAGGTATTTTTGGGATTGCCATTGCCACATTTCTCGGAATTGGATTCGGTTTTACTGTTCTTAAATACATGTAG 1374 45.41 MASQLAFFHYPVTVGKCSSFSSREIPSRILMSASILPREQSTFSSPPITKLRDFAYLKNSKYVTKNLSSSRSVKVRSHSRLILPLISPQDHWGTWTVLLAGGAFGIWSEKTKIGSALSGALVSTLVGLALSNVGIIASDAPAFSIVLEYLLPLAVPLLLYRADLRRVIKSTGTLLLAFLLGSVATTVGTVVAYLLVPMRSLGQDSWKIAAALMGRHIGGAVNYVAIADALAISPSVLTAGLAADNVICAVYFATLFGLASKVPPEAIKSSTEMVEESEPDDKLPVLQTATAIAVSFAICKSGSYLTKYLGIPGGSLPAITAIVVTLATIFPKQSGYLAPAGQAMALILMQVFFTVVGASGSIWSVINTAPSIFVFALVQIVVHLAVILGLGKLFGFDLKLLLIASNANVGGPTTACGMANAKGWSSMVVPGILAGIFGIAIATFLGIGFGFTVLKYM 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44079873 44083457 - Bma005330.1 Bma10g01241 90304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01241 457 PANTHER PROTEIN, PUTATIVE (DUF819)-RELATED 55 457 IPR008537 -
Bma10g01241 457 Pfam Protein of unknown function (DUF819) 97 455 IPR008537 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01241 - - - csv:101211894 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01241 Bma-Chr10:44079873 Bma10g01250 Bma-Chr10:44283974 0 dispersed
Bma10g01240 Bma-Chr10:44074547 Bma10g01241 Bma-Chr10:44079873 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g747 . . Bda05g00091 . Bpe03g00269 . Bma10g01241 . . . Cma02g01077 . Car02g00820 . . . . . . . . . . . . . . . . . . Cone1ag1186 . . . Lsi05g01201 . Chy09g01385 . Blo07g00382 . . . . . . . . Cmo02g01094 . . . . . . . Bhi12g00788 . . . . . Lcy12g0053 Cla05g00906 Cam05g0991 Cec05g0995 Cco05g0993 Clacu05g0979 Cmu05g0936 Cre05g1019 . Csa03g01739 Chy06g00970 Cme09g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001720 1 1 2 4 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 3 9 2 1 68