Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01272 ATGGAGAATATGCTGTATGCCGAAGAGCTTGTGAGAGAGTTTCTTATTTTCAGGGGATTTTCTGGTACACTGCAAGCTTTTGAGGCTGAACTAACCACCGATATCGGAAAAGCAATTCCATATTTAAAGAACCCAAGCTTGGATCCAGATTTTCGTGTTTATTTTTCAAAGGAATGGCATGAGTCATTGCGTGTTTCTGTGAGGAATTTCTTCAGTAAGGTTATTTCCGTGCCAATGCGTGCAAGCTTGGGCCAAATTGACAGTTCATCCGGTGTACAACGTGAAGAAAATATTCTTCGATCCACAGATAATCTGGAAGCTTGTTCACATGCTTCCCTTCAATCAGGAGAAACTGAGCTGCTCGATAGAGCTGTTTCTCAACCTGCTGAAATTCATCCGGATCTTATGACGTCCAACACTTGTCATGTCTCAAGCTCTTCACAAAAACTTGATCTGGAAGATGAAGATATTGGCAGTGCAAGCTATATATTTGGAGAAAATAAGGAAAATGGCAGAGAAAGTGATGTACAAGAAGATTTTCCTGAAGTTAAACTAGAATTTCAGGAGACATTTTTGGGCCACACTAGTCCAATTAGTCGTTGCCGCTTCTCTGCAACTGGGGACAATATAGCAAGTGCTTCTCTGGATGGCACAGTCAGGATATGGACTTATGACTCCTCTACTTCAGCTTCCAGAAATGCGACCATTTACTGTGGAGCAGAAATCATGTCATTGGACTGGGAATGCAAGTCAAATCGTTTGCTTCTCATTGGCACTTCTAATGCTGGCATCAAAGCATGGAATGTTGATGCAAAGAGAGTTGTTTGTGATCTGAACACATCCGAAATATTTCCAAGTGTATTGGATATCAAGTGCAGCCCTGTTGAGCCAATATTTGTATCTGCAGCAGCATCCAGAGGACAAGGTGTGAGCTATATTGATAGTTTAGGATATGCTTCACTAACAGTGTGGAACATGAAGACTTGGAAGCCTATGACAGTACTTCCGCTTGGCAAAGATCCTCCTGCAATCACGTCTTTATGCTTCAATCACAATGGAAAGATTTTAGCTGCCTCTGCCACTGATGGAATGATTCACATGTTTGATATGTCTGCTTGTCTACAAATCACTGGATGGCCTGCACATGATTCTGCTATAAACTCGATTCTTTTCGGACCAGATGAGACAAGCATTTTCACCTTCGGGGTGGATGGAAAGGCAAGTGCTTTATCTATTTTTGAGTGGAGCTTGCAAAACCAGGGCCAAGTCCTTTGGTCCCGAAATTGTGGCAGGTATTGGGACCCCGAGAGCACAGTGCTTTTGAGACATGAAATGGCTTTAGACCCTCATGGGAAGAGGCTCTTAGCCACGTCTGGTTCTGTGAGAGCACCCATTTATCAGGTTCGAGGCAGGAGGAATAGTGGGCTAAGAACTCTGCCACACACTGCAGCCATAACGACAGTTGATTGGCACCCAACGCTGCCTGTTTTCTTAACCGGCTCAGCCGATAACTCGGTCCGAGTCTCATCTCTGCTTTAA 1539 43.79 MENMLYAEELVREFLIFRGFSGTLQAFEAELTTDIGKAIPYLKNPSLDPDFRVYFSKEWHESLRVSVRNFFSKVISVPMRASLGQIDSSSGVQREENILRSTDNLEACSHASLQSGETELLDRAVSQPAEIHPDLMTSNTCHVSSSSQKLDLEDEDIGSASYIFGENKENGRESDVQEDFPEVKLEFQETFLGHTSPISRCRFSATGDNIASASLDGTVRIWTYDSSTSASRNATIYCGAEIMSLDWECKSNRLLLIGTSNAGIKAWNVDAKRVVCDLNTSEIFPSVLDIKCSPVEPIFVSAAASRGQGVSYIDSLGYASLTVWNMKTWKPMTVLPLGKDPPAITSLCFNHNGKILAASATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTFGVDGKASALSIFEWSLQNQGQVLWSRNCGRYWDPESTVLLRHEMALDPHGKRLLATSGSVRAPIYQVRGRRNSGLRTLPHTAAITTVDWHPTLPVFLTGSADNSVRVSSLL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45268527 45273201 + Bma005373.2 Bma10g01272 90335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01272 512 PANTHER OS05G0299300 PROTEIN 1 511 - -
Bma10g01272 512 Pfam WD domain, G-beta repeat 188 222 IPR001680 GO:0005515
Bma10g01272 512 Pfam WD domain, G-beta repeat 341 369 IPR001680 GO:0005515
Bma10g01272 512 Pfam WD domain, G-beta repeat 476 508 IPR001680 GO:0005515
Bma10g01272 512 SMART WD40_4 328 369 IPR001680 GO:0005515
Bma10g01272 512 SMART WD40_4 472 510 IPR001680 GO:0005515
Bma10g01272 512 SMART WD40_4 370 414 IPR001680 GO:0005515
Bma10g01272 512 SMART WD40_4 229 268 IPR001680 GO:0005515
Bma10g01272 512 SMART WD40_4 184 223 IPR001680 GO:0005515
Bma10g01272 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 226 - -
Bma10g01272 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 512 IPR001680 GO:0005515
Bma10g01272 512 SUPERFAMILY WD40 repeat-like 179 508 IPR036322 GO:0005515
Bma10g01272 512 Gene3D - 442 511 IPR015943 GO:0005515
Bma10g01272 512 Gene3D - 315 441 IPR015943 GO:0005515
Bma10g01272 512 Gene3D - 94 308 IPR015943 GO:0005515
Bma10g01272 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 478 512 - -
Bma10g01272 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01272 K24760 WDR91; WD repeat-containing protein 91 - csv:101209643 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01272 Bma-Chr10:45268527 Bma14g01863 Bma-Chr14:40000665 4.62E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32