Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01274 ATGGCGTCGAAGCGGATCTTGAAGGAACTTAAGGATTTGCAGAAGGATCCTCCTACATCTTGCAGCGCTGGTCCTGTAGCAGAGGACATGTTCCACTGGCAAGCCACCATAATGGGTCCTCCAGACAGTCCTTATGCCGGTGGTGTTTTCCTAGTCACTATCCATTTTCCTCCAGATTATCCCTTTAAGCCTCCCAAGGTGGCTTTTAGGACAAAGGTTTTTCATCCTAATATAAACAGCAATGGAAGTATTTGCCTTGACATACTGAAAGAGCAGTGGAGCCCTGCCCTAACTATCTCCAAGTATAATATAAGCCAAAAATGGGAAATTATAATCACACAATCTTCACTAAATTCTTGTACTGTGTTGCTTTCAATCTGTTCTCTGTTGACGGACCCAAATCCCGACGACCCCTTGGTTCCTGAGATAGCTCACATGTACAAGACTGACAGGAGTAAGTACGAGACAACTGCAAGGGTTTGGACCCAGAAGTATGCCATGGGTTAA 507 44.97 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKYNISQKWEIIITQSSLNSCTVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARVWTQKYAMG 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45296710 45302120 + Bma005376.2 Bma10g01274 90337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01274 168 PANTHER BNAA01G32320D PROTEIN 117 165 - -
Bma10g01274 168 PANTHER BNAA01G32320D PROTEIN 3 104 - -
Bma10g01274 168 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 117 165 - -
Bma10g01274 168 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 104 - -
Bma10g01274 168 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Bma10g01274 168 Gene3D Ubiquitin Conjugating Enzyme 1 168 IPR016135 -
Bma10g01274 168 Pfam Ubiquitin-conjugating enzyme 116 160 IPR000608 -
Bma10g01274 168 Pfam Ubiquitin-conjugating enzyme 5 101 IPR000608 -
Bma10g01274 168 CDD UBCc 3 162 IPR000608 -
Bma10g01274 168 SMART ubc_7 4 167 - -
Bma10g01274 168 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 167 IPR000608 -
Bma10g01274 168 SUPERFAMILY UBC-like 2 167 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01274 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - cpap:110809424 299.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01274 Bma14g01988 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01274 Bma-Chr10:45296710 Bma14g01981 Bma-Chr14:43150850 2.22E-102 dispersed
Bma15g00303 Bma-Chr15:2918653 Bma10g01274 Bma-Chr10:45296710 5.11E-15 dispersed
Bma01g00791 Bma-Chr1:7423292 Bma10g01274 Bma-Chr10:45296710 9.76E-91 transposed
Bma03g00333 Bma-Chr3:2481361 Bma10g01274 Bma-Chr10:45296710 6.78E-19 transposed
Bma06g01170 Bma-Chr6:48833174 Bma10g01274 Bma-Chr10:45296710 1.06E-105 transposed
Bma09g00360 Bma-Chr9:30648793 Bma10g01274 Bma-Chr10:45296710 1.04E-22 transposed
Bma10g01274 Bma-Chr10:45296710 Bma12g01189 Bma-Chr12:44721038 1.54E-104 wgd
Bma10g01274 Bma-Chr10:45296710 Bma14g01988 Bma-Chr14:43209204 2.22E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251