Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01285 ATGGTGGGCAGTTCATCAGATAATTTCATAGAACAAGAGACGAGTTACGGCATGAGTTTAACACCAGATGACGATCTTCTTAGTTTTTTTCAAAGCTTAGAAGATGTCGGAGAATTTCCCATTATAGACGACGACGCCATCGCCATTCGTGCTAGTTTTAAGGAATTTGAAGAAACAGCGGGGCGATCATATCATCGAAACTCATCGTCTGCCATTACTGTGCAGGAGGTCAGTTTAGAGAGAGAAACTGAGCTTGAAACCTCGCTAGAAAGAAAGAGGTGGATCTTGAAGCACAGCCGAGAAAATCAGCCTTCTTTTTCTCGGGAAACAAACACAAATGGAGATCAGAAGAGGTCTCATATAGCAGTGGAGAGGAACAGACGAAAACAGATGAACGATCATTTGTCTGTGTTGAAGTCTCTCCTGCCTTCTTTCTATGTCCAGAAGGGAGATCAAGCTTCTATTGTAGGAGGTGTAGTGAGTTACATCAACGAGTTAGAGCAAATTTTAAAAACTCTAGAGGGGAAGAAGAAGAGAAAGATTTGCAGTAAAGACAGTTTCTTAAACCCTAGTTCTAGAGCCTCGCCATTGCTAAGTCCAAGGACCCCACAAAAGAACAGTAGCTCATATCAGCTGCCATGGCTGCACAAAGCTCCAGGCTATGTCTTTTCCGATCCTTGCAATCTGGCTAATTCAGTCGACCCATCTCCTTCTTCTTCCTCTTCTACCAGTTCTTCATTTGTTGATGGATGCAATGAGCTTTTTGCTGCTACCTCTAAGTCTGCTCTGGCTGAAGTTGAAGTGAGATTTACAGGTCCTAATTTGCTTTTGAAGACTGTTTCTTCTTCTCGTTTTCCTGGTCAAGTTTTGAAAATAATGGCTGCCATCGAAGACCTCTCACTTGAAATTCTTCACTTGACCATCTCTACCAATGACGACACTACGGTCAATACCTTCACCATTAAGATTGGAATTGAATGCAAAATTAGTGCTGAGGAACTGGCTTACAACATCCAGCATACATTCTGCTAA 1032 42.34 MVGSSSDNFIEQETSYGMSLTPDDDLLSFFQSLEDVGEFPIIDDDAIAIRASFKEFEETAGRSYHRNSSSAITVQEVSLERETELETSLERKRWILKHSRENQPSFSRETNTNGDQKRSHIAVERNRRKQMNDHLSVLKSLLPSFYVQKGDQASIVGGVVSYINELEQILKTLEGKKKRKICSKDSFLNPSSRASPLLSPRTPQKNSSSYQLPWLHKAPGYVFSDPCNLANSVDPSPSSSSSTSSSFVDGCNELFAATSKSALAEVEVRFTGPNLLLKTVSSSRFPGQVLKIMAAIEDLSLEILHLTISTNDDTTVNTFTIKIGIECKISAEELAYNIQHTFC 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45456233 45457971 + Bma005387.1 Bma10g01285 90348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01285 343 Gene3D - 107 180 IPR036638 GO:0046983
Bma10g01285 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 166 IPR011598 GO:0046983
Bma10g01285 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 182 IPR036638 GO:0046983
Bma10g01285 343 Pfam Helix-loop-helix DNA-binding domain 116 167 IPR011598 GO:0046983
Bma10g01285 343 MobiDBLite consensus disorder prediction 100 119 - -
Bma10g01285 343 PANTHER TRANSCRIPTION FACTOR FAMA 5 343 IPR044283 GO:0003700|GO:0010052
Bma10g01285 343 SMART finulus 121 172 IPR011598 GO:0046983
Bma10g01285 343 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 5 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01285 K20558 SPCH; transcription factor SPEECHLESS - pop:7489812 264.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00377 Bma-Chr8:8479415 Bma10g01285 Bma-Chr10:45456233 6.04E-80 dispersed
Bma10g01285 Bma-Chr10:45456233 Bma14g01995 Bma-Chr14:43258483 2.19E-166 dispersed
Bma10g01281 Bma-Chr10:45397082 Bma10g01285 Bma-Chr10:45456233 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016607 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57987 PF00010 HLH 2.90E-11 No_clan Bma TF