Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01289 TTAGATACGTCGAGAATGTCATCGGTATCGAGCCAACCGCAGTTCAGGTACACACAACCACCATCCAAGGTTCTTCATTTGAGGAACTTGCCATGGGAGTGCTCAGAGGAAGAACTTGTTGAACTTGGGAAGCCATTTGGTAAAGTTGTGAACACAAAATGCAATGTTGGAGCCAATCGTAATCAAGCCTTTATTGAATTTGCTGATTTGAATCAAGCAATTGCTATGATATCATACTACGCTTCATCCTCGGAGCCTGCTCAAGTTAGGGGGAAAACTGTCTACCTACAATATTCCAACCGACAAGAAATAGTTAACAACAAAACTGCTGCTGACATTGCTGGGAACGTCCTTCTGGTAACAATTGAGGGTGCCGATGCCCGTCTTGTCAGCATTGATGTTCTACATTTAGTATTTTCAGCTTTTGGGTTTGTGCATAAAATTACTACTTTTGAGAAAACTGCCGGCTTCCAGGCTTTGGTGCAATTTTCTGATACAGAGACAGCTTCTTCCGCAAAAAACGCCTTGGACTCAAGGAGCATCCCAAGGTATCTGCTTCCTGATCACGTGGGAATATGTTCTCTAAAGATAACTTATTCTGCTCATGTCGATCTGAGTGTAAAATTCCAGAGCCACCGAAGCAGGGACTACACTAATCCATATCTTCCTGTCGCTCCATCAGCAATTGATGGAAGTGGTCAGATGAGCGTAGGGTTGGATGGAAAAAAACTTGAACCTGAGAGTAATGTTCTTCTTGCCTCAATTGAGAATATGCAGTATGCTGTCACCTTGGAGATTTTACACATGGTATTTTCTGCTTTTGGGCCAATTCAGAAAATTGCCATGTTTGATAAAAATGGTGGAGTTCAAGCTTTGATTCAGTACCCAGATGTTCAAAACGCTGTTGCTGCCAAGGAAGCCTTGGAAGGACACTGCATCTATGATGGTGGGTTTTGCAAGCTTCACATCTCTTATTCTCGCCACACTGATCTAAGCATCAAGGTTAACAATGATCGCAGCAGAGACTACACGATCCCGAACACTCCTGTCGTCAATCCACAAGCAACATTGGTGGGGCAACTGCCATCTCAAATGGCAGGTCCTTCCACCCATCAATACTCCGGCCAAGATCAGCCTTTGTGGGGTCAGGGCCAACCTCATTCGACAGCAATGCAGATGCACAATCCTTACATGTTGCCAGGACCGGGGTCTGTGCCAACCCAAATGGCTCATGATACGATGCCCAACCAACAGTTGACACAATTGCCTCCATATCGCCCTGATCGGATTCAATAA 1296 44.83 LDTSRMSSVSSQPQFRYTQPPSKVLHLRNLPWECSEEELVELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADIAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDSRSIPRYLLPDHVGICSLKITYSAHVDLSVKFQSHRSRDYTNPYLPVAPSAIDGSGQMSVGLDGKKLEPESNVLLASIENMQYAVTLEILHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQNAVAAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPVVNPQATLVGQLPSQMAGPSTHQYSGQDQPLWGQGQPHSTAMQMHNPYMLPGPGSVPTQMAHDTMPNQQLTQLPPYRPDRIQ 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45724872 45730384 + Bma005394.1 Bma10g01289 90352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01289 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 179 - -
Bma10g01289 431 SUPERFAMILY RNA-binding domain, RBD 130 223 IPR035979 GO:0003676
Bma10g01289 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Bma10g01289 431 CDD RRM1_PTBPH1_PTBPH2 21 101 IPR034792 -
Bma10g01289 431 SUPERFAMILY RNA-binding domain, RBD 11 106 IPR035979 GO:0003676
Bma10g01289 431 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 6 421 - -
Bma10g01289 431 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 6 421 - -
Bma10g01289 431 Gene3D - 116 226 IPR012677 -
Bma10g01289 431 Gene3D - 247 352 IPR012677 -
Bma10g01289 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 78 IPR000504 GO:0003723
Bma10g01289 431 Gene3D - 9 115 IPR012677 -
Bma10g01289 431 SMART rrm1_1 24 97 IPR000504 GO:0003723
Bma10g01289 431 SMART rrm1_1 252 322 IPR000504 GO:0003723
Bma10g01289 431 CDD RRM3_PTBPH1_PTBPH2 248 344 IPR034794 -
Bma10g01289 431 Pfam RRM-like domain 248 326 IPR021790 -
Bma10g01289 431 MobiDBLite consensus disorder prediction 409 424 - -
Bma10g01289 431 CDD RRM2_PTBPH1_PTBPH2 115 209 IPR034793 -
Bma10g01289 431 SUPERFAMILY RNA-binding domain, RBD 254 349 IPR035979 GO:0003676
Bma10g01289 431 MobiDBLite consensus disorder prediction 403 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01289 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - csv:101216093 699.123
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01289 Bma12g01192 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00427 Bma-Chr2:6453940 Bma10g01289 Bma-Chr10:45724872 0 dispersed
Bma10g01289 Bma-Chr10:45724872 Bma10g01294 Bma-Chr10:45918656 0 proximal
Bma10g01289 Bma-Chr10:45724872 Bma14g01997 Bma-Chr14:43280112 6.66E-24 wgd
Bma10g01289 Bma-Chr10:45724872 Bma08g00379 Bma-Chr8:8600138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g879 . . Bda05g00153 . Bpe03g00241 Bpe07g01008 Bma10g01289 . . . . . Car02g00915 . . Cpe05g00610 . . . . . . . . . . . . . . . . . . . . Csa05g00064 . . . . Bda06g00777 . . . . Bma12g01192 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002979 3 2 4 6 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 1 1 53