Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01302 ATGGATCTCGATAGCATTGAGTGCGTGTCGGATGGTCTGGACGAGGATGAGTTCCATCAGAACCGTACCCTTCATTCGCATCCTCATCCTCATCCTCATCCTCATCATCACCCTGAGTTTGGGTCTTCGAAACCTCGCAATGGCACTACCAATGGCGCTGTAGCTGTTCCGACTGCGACTGCTCCAGCCACCAGCGTCCATGAGTTGCTCGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATCCATCAGTGCCATAATGGGCACACTTTATGTTCGACATGTAAAACAAGAGTACACAACCGGTGCCCCACTTGTCGGCAAGAGCTGGGAGATATAAGGTGCTTGGCACTAGAAAAGGTGGCAGAGTCGCTTGAATTGCCGTGCAAGTACTACTCCTTGGGATGTCCCGAGATCTTCCCCTACTACAGCAAACTCAAGCACGAGGCGATGTGCAATTTCAGACCATACAATTGCCCTTATGCCGGATCGGAGTGCTCAATCGTGGGGGATATTCCTTTTCTAGTTGCTCATTTGCGGGATGATCACAAAGTCGATATGCACACAGGCTGCACTTTTAACCATCGATATGTCAAGTCAAATCCTCGAGAAGTCGAGAATGCTACTTGGATGCTCACTGTAAGTTTGAAATTTGGTTGTACAAGTTTGTTTCTAGTATTGTATTGTTTAGTCGTATGGTTTGATTTCGGCCAATTTTGTTTCAGGTATTCCATTGTTTTGGGCAGTACTTCTGCCTCCATTTTGAAGCTTTCCAGCTCGGAATGGCACCATGTTTACATGGCATTTCTCCGCTTTATGGGCGATGAGAATGAGGCTCGAAGCTACAGCTACAGCCTCGAGGTTGGCGGGTATGCTCGGAAATTGATATGGGAGGGAAGTCCACGAAGCATTAGGGACAGCCATCGAAAGGTTAGGGATAGCCACGACGGGCTAATAATTCAAAGAAACATGGCGCTTTTCTTCTCCGGTGGGGATAGAAAGGAGCTGAAGCTGAGAGTTACAGGGAGGATATGGAAGGAGCAGAACCCAGATGCTGTTGTGTGCATACCAAACCTGTGTAGTAGCTAA 1092 47.99 MDLDSIECVSDGLDEDEFHQNRTLHSHPHPHPHPHHHPEFGSSKPRNGTTNGAVAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVSLKFGCTSLFLVLYCLVVWFDFGQFCFRYSIVLGSTSASILKLSSSEWHHVYMAFLRFMGDENEARSYSYSLEVGGYARKLIWEGSPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAVVCIPNLCSS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46420593 46422236 - Bma005412.1 Bma10g01302 90365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01302 363 SUPERFAMILY TRAF domain-like 256 346 - -
Bma10g01302 363 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 242 342 IPR008974 GO:0005515
Bma10g01302 363 Pfam Seven in absentia protein family 114 342 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bma10g01302 363 MobiDBLite consensus disorder prediction 22 52 - -
Bma10g01302 363 SUPERFAMILY TRAF domain-like 125 231 - -
Bma10g01302 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 180 IPR013083 -
Bma10g01302 363 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 354 - -
Bma10g01302 363 SUPERFAMILY RING/U-box 60 112 - -
Bma10g01302 363 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Bma10g01302 363 CDD RING-HC_SIAHs 70 108 - -
Bma10g01302 363 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Bma10g01302 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 124 IPR013083 -
Bma10g01302 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01156 Bma-Chr6:48463528 Bma10g01302 Bma-Chr10:46420593 1.52E-168 dispersed
Bma10g00166 Bma-Chr10:1436823 Bma10g01302 Bma-Chr10:46420593 2.72E-145 dispersed
Bma10g01302 Bma-Chr10:46420593 Bma14g01115 Bma-Chr14:14028103 1.56E-20 dispersed
Bma10g01302 Bma-Chr10:46420593 Bma12g01203 Bma-Chr12:44963733 2.09E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01302 K04506 - csv:101215696 573.933