Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01303 CCGTCAATGGCTGCTAAGCTCAGATCCAATCCCTCCATGGAAAAAGCTTCGCTCACGATATCTCGGGTTAGATACTTCATATCCAGCTACATGCACGCTGGTCGCATGGCGAATTCTCACTACCCTAACCGTGATAAATGGGATGACCTTTTTGTTAACACCCCTTACCACTTCACTTCATTTAAACCGGTCTCACTTCGCGGCGATTTCGTTGAAAAGGGTACGCAGTGCTTCGATAATCAGAGAATTCCCCAGGTTTATGGGAAGAATTTTGTCAAGAATTGGACCCAGAAGTTAAGTAGCGGCCGTACCGTTTTGAGCACTTATGGGGACCCGCCGGAAGTGTGGTCTGGAGACGGACTTGTGATTCGGACGGCCAATTCAAGCTTAAATGTGGTCCGAGGAGGTGGAGGAGGGAGTTCTGGTCCTGCCACAGGTTCCGGGTCCGGCTCGAACTCGAAGGATGGGTCCTGGGGCGGTTCCATCATGGGACCTAACTTTCCAACTCCGAAGGAGATCTGCAAGGGGCTTGATAAGTTTGTTATTGGTCAGGAGAGAGCTAAAAAGGTGCTTTCTGTGGCTGTTTACAATCACTACAAAAGAATATATTACGAGTCGCTTGAAAGGCCTGCAGGAGACTCGAGTAATAATGCAGCAGAAGCCATTGATGATGAAAGAGTGGAACTTGAAAAAAGCAATATTCTTCTCATGGGGCCAACAGGCTCAGGGAAGACGTTACTTGCCAAAACCTTGGCACGGTTTGTGAATGTTCCCTTTGTCATTGCAGATGCAACTACGTTGACCCAGGCAAGATATGTTGGGGAAGATGTGGAGTCTATATTGTACAAACTTCTCGTGGTTGCTGATTATAACGTAGCTGCTGCACAACAGGGGATTGTCTACATAGACGAAGTTGATAAGATTACCAAGAAGGCCGAGAGCCTTAATATAAGTCGAGATGTCTCTGGAGAGGGCGTTCAACAGGCATTACTAAAGATGCTTGAAGGCACCATTGTCAATGTTCCTGAGAAGGGAGCCCGGAAGCACCCTAGGGGTGAAAATATTCAGATTGATACAAAGGACATTCTTTTCATATGCGGAGGCGCTTTTATCGACTTGGAGAAAACCATTTCAGAAAGGCGACGAGATTCTTCTATTGGGTTTGGTGCTCCTATTCGTGCAAACATGAGAACAGGTGGTGTTACAGATTCTGCTGTTACATCATCGTTGTTAGAGACTGTAGAAAGCAGTGATCTAATTGCATATGGCTTAATACCTGAATTTGTGGGACGATTTCCTATTCTTGTCAGTTTATCTGCTCTTACTGAGGATCAGCTTGTTCAGGTATTGACTGAACCAAAAAATTCATTGGGAAAGCAATACAGAAAGCTCTTTCAAATGAATAGTGTAAAGCTGCACTTTACAGAAACTGCTTTGAGGTCAATTGCTAGAAAGGCCATGTCTAAGAACACCGGAGCTCGAGGCTTACGGTCGTTGCTGGAAAGCATTTTGATGGAAGCCATGTATGAAATTCCAGATGTTAGAACCGGGAATCAAATAATCGATGGTGTGGTCGTCGACGAAGAATCAGTCGGTGGTGATGGGAAAAGTTGTGGGGCGAAAATTCTTAATGGAAAGGGCGCACTTGATCGGTATCTTTCACAGCAAAAA 1671 45.48 PSMAAKLRSNPSMEKASLTISRVRYFISSYMHAGRMANSHYPNRDKWDDLFVNTPYHFTSFKPVSLRGDFVEKGTQCFDNQRIPQVYGKNFVKNWTQKLSSGRTVLSTYGDPPEVWSGDGLVIRTANSSLNVVRGGGGGSSGPATGSGSGSNSKDGSWGGSIMGPNFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYYESLERPAGDSSNNAAEAIDDERVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESILYKLLVVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRRDSSIGFGAPIRANMRTGGVTDSAVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNSLGKQYRKLFQMNSVKLHFTETALRSIARKAMSKNTGARGLRSLLESILMEAMYEIPDVRTGNQIIDGVVVDEESVGGDGKSCGAKILNGKGALDRYLSQQK 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46423448 46428107 - Bma030404 Bma10g01303 90366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01303 557 MobiDBLite consensus disorder prediction 142 159 - -
Bma10g01303 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 522 IPR027417 -
Bma10g01303 557 Pfam C-terminal, D2-small domain, of ClpB protein 441 511 IPR019489 -
Bma10g01303 557 SMART AAA_5 230 393 IPR003593 -
Bma10g01303 557 MobiDBLite consensus disorder prediction 133 162 - -
Bma10g01303 557 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 3 557 - -
Bma10g01303 557 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 166 528 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Bma10g01303 557 Gene3D - 161 439 IPR027417 -
Bma10g01303 557 CDD AAA 231 342 - -
Bma10g01303 557 Pfam AAA domain (Cdc48 subfamily) 230 434 IPR003959 GO:0005524|GO:0016887
Bma10g01303 557 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 3 557 - -
Bma10g01303 557 Gene3D - 440 542 - -
Bma10g01303 557 SMART ClpB_D2_small_2 441 538 IPR019489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01303 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - zju:107414773 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00899 Bma-Chr1:8442556 Bma10g01303 Bma-Chr10:46423448 0 dispersed
Bma08g00667 Bma-Chr8:41157286 Bma10g01303 Bma-Chr10:46423448 2.07E-16 dispersed
Bma10g01303 Bma-Chr10:46423448 Bma02g01142 Bma-Chr2:53191201 2.93E-07 dispersed
Bma10g01303 Bma-Chr10:46423448 Bma07g00456 Bma-Chr7:5501706 4.32E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75