Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01304 ATGGATAAGAAAGAGGTCTTGAACTTGAATTTATTGATCACTGAAGAGAAGTGCGAAAGCTTGTATCCTGTGTATTTCGGTGTTTCTTGTGCATTCTTTGCTCTCCAGCTGTTGTCGGTTTCCGGCAAGGACGAGAACTGTGAGAAACTGGTTCAGGGAAGTGCACAGCTGTTGGGGTTGCTAATTTGGATGAACAAGCAAAAGTCTGATCTTCTTCATAAGATCGAGATTGCAGAAAGAGAGATCGAAACGTTGAAGAGAACAAGGCGGGAAGACGCAAAAGCAAACGAGAAAGTTGTCCGGATTTTCGCGACACAAGAGCAGAGTTGGTTCGTCGAGAGGAAGAAACTGAGGCAGCATCTCGGAGGTCTCATGAAGGAAATGAGAATTTTCGAGAAGAAGAAGGAGGAGGAGGCCTTCGAAATGAGTGACAGGTTGAAGGAAATGGAGTTTTTGATGGAGTCTATGGAGAAAAACGTGGAGGAAGAGACAGAAAAAAGAAAAGAGCTGGAGGAAAAGCTATCAAATGCTGAAAATGTAGCAGAGGAATTGAGAGAGAAAGCTAAGGGGGAAGCTAGAGAGCATTCTTCCGGGCTATGGAAGCTCAAAACAGCATTCATCGAACTCGTTTCAAATCAACGACGGCTCGAAGCCGAGACGAGGCGATCGGCAAAGCAAGTAGAGGCTACGAAACAAGAGCTTAATTCAGTCTTATTACAAAAGGAGGAATCTGTTCTTTTGGTTCAAAAGTTATCTGCTCAAGTAGTGAGAATGAGTAACGATTTAGAACACAAGGATAAGATCTTATCTGCCATGCTGAGGAAATCGAAGCTCGACCGTGCCGAGAAGCAGATGCTTCTAAATGAGGTTAAGCTATCGAAAGCTAAGAGGAAACAAGCAGAACTAGAAATGGAAAGGTGGAAGTCTGCGTCCGAATCGAGATATGAAAGACAGTCGTTAAGAAGTGTAGTATCCAGTGAACTGAATCCACGACCGGACGTTTCTTCGAGCGGGAAAGCCGGATTAATGGCCATTGATCATGTCATCGAAAGCAACTATCTCGAGTTCATGAGGGAGTTTGATTTTTACTGTCCTCTTTCAAACGGCTTCACCTCACAAGGAAATGACATTGCTGATCTGCAGCAGCTAAACGTTTCGGTTCAGACGCAAGCAGAGAAGGAGGGATTGATGCTGCTGCAGCAGCGGCACAACGAAGAGATAGATGCTTTTGCAGAGCAGATGAGGGTCAAAGATGAAAAACTGGAAGCTTTTCGATGGCAGCTCCTGAGCATGGAATTAGAAATGAAACGATTGCATTCCCACGCAGCGGGATTGAATCAGGATGTATTACAGCTCAAACGCGATAACATGAAGTTGGAAGCCTTGTCAGTGGCCAGAGAAGAAGAACTAGCCTCCCTGAAAATGGAGTTGATTAAATCGGTGGAAGCAGAAGCGGTGGAACCGGAGCGGTCAGCGAAAATGGCGGAAGAAGAAGATGTTGCTTCGGACAAAAACTCAACCATTAATCATTTTCATTATTCATCCAAAGAGTTGGAAGAAAGAAAGGATGTGGCCTGCCAGAGTCCTTCTCAAATTGCCGTAAAGATCGAATCACCTAAGCTGCAGTCGAATAAATACAGGGTGGATCTTCATGCTCTTGGAGTGTCATTCAAGATCAAAAGGCTAAAGCAGCAACTTGTTATGCTCGAGAGAATGGCTGGCCGGAAAGAAAATGAAGGCTTCAATAACGAACAAGCCGGGACAAAAGATTTTGTTTCGCTGAACAAACAAGTCGGTAGGTACGAGTCTCTCCAAGGAAAAGCAGACGATCTTTGTCGACGCATGCATGAGAGCGACGAAGCAAGTTCGGGAGATTCTGAGACAGCAAGGAAGAAAACATTGCTCGAAGAGACGTTGCAGCTACAGAGAAATGTTGTTGCTTCAGGACAAAAGCTGGTGGAAATTAAATCCAGAATTTGTTGTGCATTTTCTGGGATTGATGATCAGCTAGTCGAGTCATCTGGGCACGACGTGAAACGCTTTTCAGACAACGTAAGGACACAGTATGAGGAAGTGCAAAGAGGTGTTGAGGTTCGAATTGCTCGAATGATCGGAGATCTTGAGGGGGCCTTGGCTCGCGAGGGAATGAGTCGCCTGCATAGGTAG 2166 45.15 MDKKEVLNLNLLITEEKCESLYPVYFGVSCAFFALQLLSVSGKDENCEKLVQGSAQLLGLLIWMNKQKSDLLHKIEIAEREIETLKRTRREDAKANEKVVRIFATQEQSWFVERKKLRQHLGGLMKEMRIFEKKKEEEAFEMSDRLKEMEFLMESMEKNVEEETEKRKELEEKLSNAENVAEELREKAKGEAREHSSGLWKLKTAFIELVSNQRRLEAETRRSAKQVEATKQELNSVLLQKEESVLLVQKLSAQVVRMSNDLEHKDKILSAMLRKSKLDRAEKQMLLNEVKLSKAKRKQAELEMERWKSASESRYERQSLRSVVSSELNPRPDVSSSGKAGLMAIDHVIESNYLEFMREFDFYCPLSNGFTSQGNDIADLQQLNVSVQTQAEKEGLMLLQQRHNEEIDAFAEQMRVKDEKLEAFRWQLLSMELEMKRLHSHAAGLNQDVLQLKRDNMKLEALSVAREEELASLKMELIKSVEAEAVEPERSAKMAEEEDVASDKNSTINHFHYSSKELEERKDVACQSPSQIAVKIESPKLQSNKYRVDLHALGVSFKIKRLKQQLVMLERMAGRKENEGFNNEQAGTKDFVSLNKQVGRYESLQGKADDLCRRMHESDEASSGDSETARKKTLLEETLQLQRNVVASGQKLVEIKSRICCAFSGIDDQLVESSGHDVKRFSDNVRTQYEEVQRGVEVRIARMIGDLEGALAREGMSRLHR 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46431373 46433691 + Bma005413.2 Bma10g01304 90367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01304 721 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 495 720 - -
Bma10g01304 721 Coils Coil 224 244 - -
Bma10g01304 721 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Bma10g01304 721 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 10 493 - -
Bma10g01304 721 Coils Coil 68 95 - -
Bma10g01304 721 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 495 720 - -
Bma10g01304 721 Coils Coil 146 194 - -
Bma10g01304 721 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 10 493 - -
Bma10g01304 721 Coils Coil 442 462 - -
Bma10g01304 721 Coils Coil 559 579 - -
Bma10g01304 721 Coils Coil 278 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01304 - - - rcu:8272410 682.945
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01304 Bma14g02010 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01304 Bma-Chr10:46431373 Bma14g02010 Bma-Chr14:43504867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1034 . . Bda05g00127 Bda07g01937 Bpe03g00231 . Bma10g01304 Bma14g02010 Cmo16g00050 . . . . . . . Cpe14g00035 Bhi01g01496 Tan01g0088 . . . . . . . . . . . . Cone1ag0989 . Cone14ag0007 . . . . Cme06g01147 Blo07g00332 Blo09g00023 . . . . . . . . . Cma16g00041 . . Car18g01242 . . . . . . . . . . . . . . . . . Csa03g01980 Chy06g01195 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004185 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 43