Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01307 ATGATGGATGACATCAGGGAAGAAAACAAATGCCTGTTTTTCGATGCGGTGGAGGATGTTACTTCAATATCTGATGGAAATTGTGATGGCAGAGGGATTTTTCATTACAATTCTAGTTTTAATGCTTGGTTTGAGGGTAGTTTCTCGTATGATGTTTGGAGAAGGAGTCCCCAAAGCGTCGAAGAGCGACGCTTAAGGTTTTTACGATGGATGGGGCCGAACTGGGATCAAATTGGTTTCGATAACTCAGAAGATTTATGTGGTGATGTGGTGGAAGAACAAGATGAAAGAGTTAGGGAGACCAATGGGGCTGCAGATGAGGTCTGTTCAACTGATAATTTCAACTCGGCTGAGGAGACAGATTCAGTAGAAACTTGTGTTGGTAAAGATGGGAGAAGAATTGTCTCTGATTATGAGAAAATGAAGCTGACTGGCAGGAGTGAAAGAAGGCCTAGTTCACCTTCCTCGGTTCATACGATGGAGACCGAGCTTCGGAGGAGAAACAGTCTGGTGGATGCTGTGAAGAGGCAGAAGAAGAATTGGGTGCATAGGTTGCGATCTTTAGCATCCGTGGGTGATGCACGGGGTGAAGATTTTGTGTCGAGATCAGACGGCTACGCACTTCCGAGGCCTAAAAGAAGAGTTAAGGTCCACCATTTCAAGAAGCAAACTAAGGAGCTTTCTGCTCTGTATAAAGGGCAAGACATCCATGCTCATGATGGTGCAATTTTGGCAATGAAGTTCAGCCCTGATGGGCAGTATCTTGCAAGTGGAGGAGAGGATGGGACTGTTAGATTGTGGCAAGTAGTGGAGGATGAGAGATGTAATCAAACAGACATTCCAGAAATAGATCCATCTTGCATCTACTTCACACTCAACCATCTATCTGAATTGGAGCCTCTAGTTCATCACAAAGAGATCACGGGTTTCAGATCAACCAACCTGAAGAAGACATCTAAATCGGCTTGTGTCATTTTCCCTCCTAAAGTTTTCCGAATAGTGGAAAAGCCGGTGCATGATTACCGCAAGCACAATGATGAGATCTCTGATCTATCATGGTCCAAGAATAACTATCTTCTCTCCTCATCAGTCGACAAAACCGTTCGCCTATGGCGTGTAGGATGTGACGACTGCATAAAAGTTTTCTCCCACAGTGATTATGTCACTTGCGTTCAGTTTAATCCAGCGGATGATGATTACTTCATTAGCGGTTCGATAGACGGAAAAGTTCGCATTTGGAGAATTTCGACATGTCAAGTTGTTGACTGGACTGATGTTAGAGATATCGTTACTGCAGTGGCTTATCGGCCTGACGGAGAGGGAGGAATTGCCGGCTCAATGGCAGGTGATTGTCGCTTCTACAACATCTCAGATAACCATATGCAGTTAGATGCTCAGTTATCCTTTAACGCCAAGAAGAAGTCTTGTGCTTCCAGGAAGATTACAGGCTTTCAGTTCTTTCCCCAAGATTCTAGCAGAGTGGTGGTGACCTCTGCTGATTCCCATGTCAGAATTGTTCATGGCTCTAATGTGGTAGGGGCATACAAGGGTAGGCCTCTCTTAACTATCTGTTCTTTTTTTTTAACAGTGAATTCTAGAGTTATTAGCTCTCTATATCTCTTGTCTTTAGGATTTCGCAATGCTGGAAACCAGATTTCAGCGTCTTTCACTGCCGATGGGAAGTATATTGTGTCGGCCTGTGGAGATTCTAATGTATATCTATGGAACTCGGGCCATAGTGGAAGAGGTCGGTCTCACGGGGAGAACATTAAATCGTATGAGCATTTCTCGACCAATGCCTCCGTGGCAGTGCCTTGGAATGGTTTGAGATATGGTGACTCAGAGAAGGGATGCCAATATCATCCATTGGAGATGATTGCAGAAGAAAATCTGCGTCTCTCTTCGCCGGCTAGTTTCTTTCCAAAAGGGTCGACACTTTGGCCGGAGGAGAAACTAGGTGAATCGAAGCTGCATTTCAAGCAACTGAGAAAGCATAAATCTCAACACAAGTTGCTCAAATCTTCCTGCAAGAACACATCAAACTCCAACGTGTGGGGCGTGGTCATTGTCACCGCGGGGTGGGACGGGCGGATCAGGTCGTTCCACAATTATGGACTGCCTTCAACAGTTTGA 2133 45.01 MMDDIREENKCLFFDAVEDVTSISDGNCDGRGIFHYNSSFNAWFEGSFSYDVWRRSPQSVEERRLRFLRWMGPNWDQIGFDNSEDLCGDVVEEQDERVRETNGAADEVCSTDNFNSAEETDSVETCVGKDGRRIVSDYEKMKLTGRSERRPSSPSSVHTMETELRRRNSLVDAVKRQKKNWVHRLRSLASVGDARGEDFVSRSDGYALPRPKRRVKVHHFKKQTKELSALYKGQDIHAHDGAILAMKFSPDGQYLASGGEDGTVRLWQVVEDERCNQTDIPEIDPSCIYFTLNHLSELEPLVHHKEITGFRSTNLKKTSKSACVIFPPKVFRIVEKPVHDYRKHNDEISDLSWSKNNYLLSSSVDKTVRLWRVGCDDCIKVFSHSDYVTCVQFNPADDDYFISGSIDGKVRIWRISTCQVVDWTDVRDIVTAVAYRPDGEGGIAGSMAGDCRFYNISDNHMQLDAQLSFNAKKKSCASRKITGFQFFPQDSSRVVVTSADSHVRIVHGSNVVGAYKGRPLLTICSFFLTVNSRVISSLYLLSLGFRNAGNQISASFTADGKYIVSACGDSNVYLWNSGHSGRGRSHGENIKSYEHFSTNASVAVPWNGLRYGDSEKGCQYHPLEMIAEENLRLSSPASFFPKGSTLWPEEKLGESKLHFKQLRKHKSQHKLLKSSCKNTSNSNVWGVVIVTAGWDGRIRSFHNYGLPSTV 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46463325 46465828 + Bma005416.1 Bma10g01307 90370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01307 710 PRINTS G protein beta WD-40 repeat signature 255 269 IPR020472 -
Bma10g01307 710 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Bma10g01307 710 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Bma10g01307 710 SUPERFAMILY WD40 repeat-like 236 700 IPR036322 GO:0005515
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 576 IPR001680 GO:0005515
Bma10g01307 710 Gene3D - 114 294 IPR015943 GO:0005515
Bma10g01307 710 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 518 - -
Bma10g01307 710 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 544 709 - -
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 381 417 - -
Bma10g01307 710 SMART WD40_4 416 455 IPR001680 GO:0005515
Bma10g01307 710 SMART WD40_4 224 268 IPR001680 GO:0005515
Bma10g01307 710 SMART WD40_4 334 372 IPR001680 GO:0005515
Bma10g01307 710 SMART WD40_4 464 507 IPR001680 GO:0005515
Bma10g01307 710 SMART WD40_4 375 414 IPR001680 GO:0005515
Bma10g01307 710 SMART WD40_4 531 576 IPR001680 GO:0005515
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 373 IPR001680 GO:0005515
Bma10g01307 710 MobiDBLite consensus disorder prediction 142 165 - -
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 373 - -
Bma10g01307 710 Pfam WD domain, G-beta repeat 377 413 IPR001680 GO:0005515
Bma10g01307 710 Pfam WD domain, G-beta repeat 336 371 IPR001680 GO:0005515
Bma10g01307 710 Pfam WD domain, G-beta repeat 237 267 IPR001680 GO:0005515
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 277 IPR001680 GO:0005515
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 417 IPR001680 GO:0005515
Bma10g01307 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 269 - -
Bma10g01307 710 Gene3D - 302 474 IPR015943 GO:0005515
Bma10g01307 710 Gene3D - 475 608 IPR015943 GO:0005515
Bma10g01307 710 PANTHER WD REPEAT DOMAIN 44 5 518 IPR040324 -
Bma10g01307 710 PANTHER WD REPEAT DOMAIN 44 544 709 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01307 - - - qsu:112008846 724.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01307 Bma12g01219 CCT
Bma08g00392 Bma10g01307 CCT
Bma10g01307 Bma12g01219 ECH
Bma08g00392 Bma10g01307 ECH
Bma10g01307 Bma14g02015 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01307 Bma-Chr10:46463325 Bma15g00824 Bma-Chr15:20240482 9.97E-126 dispersed
Bma10g01307 Bma-Chr10:46463325 Bma12g01219 Bma-Chr12:45091080 0 wgd
Bma10g01307 Bma-Chr10:46463325 Bma14g02015 Bma-Chr14:43527149 0 wgd
Bma10g01307 Bma-Chr10:46463325 Bma08g00392 Bma-Chr8:9571394 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52