Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01310 TCATTAAAATTTCAAGGAAAGAAGTTCATTTGCTCAAATATTGTTCTGATCATGGAGGATCCCGTACGAAAAGTTTTATACGAAACTCGTCTTCATGCATCGCGGCCATATACGCCCAATTATCCTCCTCAGCAGGTTCTTCATCTACTCTTTTCACTCTGCTTTATGAACCTTAAGGAAAAATTGAGTGAATACAGATACAACCAACCGAGAAAAGTGAAACGATTGATATCTTTGTACATTTCACCGAGAGGTGAACATGTGGCTGTGGCCACTGGAAATCATTTAACAATTTTTCGGAAGACAGATGACTACCACGAGCCTTTCGGCTCATTTACAAATCCTGTCTTGACTACATTTTCCATTGGCACTTGGTCTGAAAGTCACGACGTTCTTGGAGTTGTTGATGACACTGAGACACTATATTTTATAAAAACTAATGGTGAAGAGATTACAAGAATCACCAGGAGGCAGTTAAAAGTCCCTTCACCTATCATAGGTTTGATTGCTTGGGAGAATTTTGATACACAGAGATCTTACTTGTGTAGCTTCATTATCATAACGTCAGATGGTTCACTTCAACTTATGGAGATTGGTCATGATCCAAGCATATCTATGCTTTCAGTTTGCATCTCAAACAATGAGTTAGCAATGAAAAGTCAATTTCCTAGTAGAATCTTCTGCTGTGATTTTCATCCTGACCTGTCTGTACTTGTTATCATTGGTAGCCCATGTCATCTTTCTGTTTGGCGAATTAGTAGAAACTTAGATTTGGAGCCATTGTTCTCTCTACAGTTTGGGGGTTTCTATGTCAAACCAAATGGACATGGAGGTCAAATATCATATAGAAAGCTCCAAATTTCTCCTCTGGCCCAATTTGTTGCTACTTTAGATGTGACGGGATGTTTATATATTTTCAAGCTGGACAAAAAACATTTTACAGTTTCAAATTTTTATTTTAGCGAGCAAGACAACACAAATGTGGAAAATTGTTTTCCAACTGAAAAAAAGGATTTCCCAAATGATGTTTGGGATTTTACATGGTGGTCTGATCATATACTTATAATTGCAAAGAGGTGTGGTATTGTCATCATGATTGACATTCTTAGTGGTCGAAAAATTCAGGAGGATGGACCCAAATACTTGTTGCCTATTTTAGAAAGAGCGAAGTATGTTCCAGGTCATCTCTTTCTCTTAGGGAGTACAGTATATAAAGAGAAACTTGATTCATCAAAAGGTGCAGATTATGACGAATGCAATGAATTTAATCTGATAACAGAAGATACACATAATCATTGTGATATTTCTAAGTTGAAATGGCACCTGGAAACATTTTCTGAGAAATCTGTTTCTGAAATGTATAATATCTTAATTAGCAGTAAGAAATACCAGGAGGCATTAGAATTTGCAGATTGCTATGGATTGGATAAAGATGAAGTATTGAAGTCTCAATGGTTGAATTCTGAACAAGGAATAGAAGAAATAGATACATTTCTTGCAGATGTTAAGGATAAAGTTTTCGTACTTTCTGAATGTGTAAATAAAGTTGGTCTGACAGAAGAGTCTGTGAAGGCTCTTCTTTCTCATGGATTGCAAATTACTGATCAATGTAGATTTTCAGATTCTGAAGATCATCAAGATGATGAAATAGCTAGACTTCAAATATTGCAATTCAGAGACAAATTGGAGACATATCTTGGGATCAACATGGGCAGGTATTCTATGGAGGAATATCGTAAATTTCGCATTGTTCCTATGCATGAAGTTGCTCTTACCCTTGCCCAAAGCGGAAAAATTGGTGCTTTAAACCTCTTGTTTAAACGGCATCCATATTCCCTTTATTCTACTATGTTGGAGGTTTTAACTGCTATTCCAGAAACGATTCCTGTACAAACTTATGGGCAGCTTCTTCCTGGGAAGTCTCCTCCTACTACTATAGCTGTCAGGGAAAAAGATTGGGTTGAATGTGCAAAGATGATCAGATTTATAAGTCAATCATCTGATAATTCTGGGGTTGGCATGCAAGTGAAAGTCCCAAAGCCTTTGAATTTTTTCTTAGAGGCTCATGCTGATGGAAAAGGTGTTAAACAAATTTTTCGCCTTATACTATCAAAATTTAGTCGTCGACAGCCTGTCCGATCAGATATTGATTGGGCAAACATGTGGCGTGATATGCAATACTTAAGGGACAAGGCATTTCCTTTCCTAGATCTGGAATATATGTTGTTTGAATTCTGCCGGGGGCTGCTAAAAGCCGGAAAGTTTTCTCTTGCAAGGAATTATTTAAGGGGTACGAGTTCAGTATCTTTGGCATCAGATAAGGCTGAAAATCTTGTTATTCAAGCTGCTAAGGAGTATTTTTTTGCTGCACCAAGTCTCAGTTGCCCTGAAATTTGGAAGGCTAAAGAATGTCTGAATTTATTTCCGAGCAGAAATACTAGAGCAGAGCTTGATATTATTGAAGTGATTACAATTAAATTGCCAAGCCTTGGAGTGACAATTCTACCCATGCAATTCCGGCAAATAAAAGATCCGCTAGAAGTGGTCAAAAAAGCAATCTCTTGTCAAACAGGAGCTTATTTGCATGTTGATGAGCTCATTGAAGTTGCTAAACTTCTTGGATTGAATTCGATTGATGACGTATCAGCAGTTGAGGAAGCTATTGCTAGAGAAGCTGCGGTTGCTGGTGATCTGCAACTGGCATTTGACCTCTGTCTTGTTTTAGCTAAAAAAGGACATGGTTCCATTTGGGACTTGTGTGCTGCAATAGCAAGGGGTCCAGCACTTGAAAACATGGATGTAACTTCCAGAAAGCAGCTACTTGGTTTTGCTTTGAGCCATTGCGATGAGGAGTCAATTTCAGAGCTCTTATATGCTTGGAAAGATCTTGATATGCAAGGGCAGTGTGAAACATTAATGAATTTGACTGGGCGAAGTTCTTCTAACTTTTCATTTCAAAGTTCTTTGCATAGCACTCAGAATATAGTTGATGAAAAACAATGTTATACATTTCTCCAAGACAATTGTGGTGAAGTTCAAGAAATTGAAATGGACAAATTAAGAGGTAGTATATATGACGTTGCAAAAAAATTACCCATTGAAAACAAGATGAGCCTTGAATCTTTTTTTGGTGAGAACGGGAAGGTTGTGGTTTTTGCTGCTTCACAGCTTCCTTGGTTGATTGAATTGAGCATAAAAGGTGAAAATGAAAAAAAAATGATTCCTGGAAAGAAATATGCCAGTGTCAGGACCCAAGCTATGGTGACAATATTATCCTGGTTAGCAAGAAATGGTTTTGTACCCACAGATCGCTTAATTGCTTCTCTGGCACAGTCAGTCATTGAACCACCTGTTACCAAAGAGGACGACTTAATTGGTGGTTTTCTTTTGTTGAATCTAATGGACGCCTTAAATGGGGTTGAAATTATAGAAGAGCAACTAAGAGCTAGGGTCAATTATTCGGAAGTCTGTAGCATTACAAATGTAGGGATGACATATTGTTCGTTACATAATTCTGGAGTTGAATGTGAGAGTCCAGCTCAGAGGAGAGAACTGCTAATGAGAAAGTTCAGAGGAAAGCATTTATCCCCCAGCTCTGATGAAAATATAAAACTTGGTAAAGTACAATCTTCATTTTGGAGGCAGTGGAAAGTGAAGTTAGAGGAACAGAAGCGTGTAGCAGATCATTCCAGAGCATTAGAAAATATACTTCCTGGTGTTGAAACTGCACGTGTTTTGTCTGGGGATTCTAATTATATTTCAAGTGTTGTTCACTCCCTGATTGAATCGGTAATGTTGGAGAAGAAGCATATTATAAAGGACGTTCTGAAGTTAGCTGACACTTATGGCTTGGAGCGCATTAAGGTATTGCTAAACTATGTAACTTCGATCCTTATATCTGAGATTTGGAGCAATGATGATATAATGGTTGAAATCGCAGAGTTCAGGCATGAGTTGATTGATTGTGCTGCAGAAACTATTAAAGCCATTTCCATGAGTGTATATTCTGCAATTGATGGCTATAATAAGTTGCGGCTATCTTATGTATATGGTTTGTTGCACGACTGCTATTCGAAACTGGAAAAAACTGGAGAGTTGGTGTCAATGGCTCATCACAGTGAGATTCGTGTAACTAGTTTTGGCTTCTCTCATTTCTTTGAGATAGTTGGACAAGAATGCAAAAAAGTAGCTTTCATCAAGAATCTAAACTATAAAAATATTGTTGGGTTAGGTGACTTGAACTTTAAGTGCTTCAGCCAAGAAGTCTACGCAAATGTTGATGAAAACAATTTGGAAGCTTTGGCCAAAATGGTGGAGTCACTTATCAGTTTGTATGTTGAGCCAGTGCCTGAGGGTCTTATTTCTTGGCAAGATGTTTACAAATTCTTCGTCTTGAATTTGTTGACAACCCTTGAGACTAGGTTTACAACTGATTTTAATTTCAAAAGCCCTGAAGACCTTCAGGATTTAGTGAGTCAACTTGAGCATAGCGTTGACTCATGTAGAATGTATATCAGATTCTTGACTCGTTCAGATGCCGTGCACACTTTGAAACGGTACTTCACCATAATCATACCTCTTTATAGTTCTTGTGCAGAAGTACCCGACAACTCAGCATGGCAGGATTGCCTCATCACCCTTTTGCATTTTTGGATTAGATTAGCATTGGAACTTAAAGAAGTTATATACCATGGGAAGCCAAAAAAAAATTCAATGTGTAGTCCGGATTGTTTAACAAGTTGCCTTGAAGTTTTTATTAGATTGGTGAAAGAAGATAGTATCTCCCCAAGTCAGGGCTGGGCAACTACTGTGAACTATGCCAAGAATGGTTTAATTGGTGATCTTTCTCAAGAAGCTTTCATTTTTTGCAAAGCTATGGTTCTTTCAGCCTGTGGGTTTGGAGCCGTTGGAGAGGTATTTTCTGAGACAGTGTCGCGACTTTCAACTCTTTCCACATTAAGCACTGAGATGGAAGTCCAGGATCTTCCCCATCTATATTTGAAAGTTTTTGAGACAATATTAGATGAATTACTCAGTTGTGCCCATGAGCACCAAAATTTGCACCACTTGTTGTCATCCCTAAGCAAATTAGAAGGTGATTTGGAAGAACTGAGAAGAGTCAGACAGTTGGTTTGGGAAAGAATGGCCGAGTTTTCTGACGATCTTCAAATACCGAGCTCTATCAGAGTTTATGTCCTAGAGCTCATGCAATTTATTGCAGATAAAAGTATTAAGGGTTTCTCTGCCGAGATTCAATATAATGTTCAATCATGGGAAGGGTGGGATGCATTTCAATATAGAAGTAAAGAGAGTGAAACTGTTGGTCCTGGACCAATCTTATCTGATCATAAAGATGCTTCTAGCCGGTTAACGAGTACATTGGTTTCCCTAAAATCATCTCGACTGGTGTCTATGATTTCACCCAGTTTGGAAGTTAAATCTGACAATCTTTTGACAGTGGAGACTACATTTGCTTGCTTTTTAAGGCTTTGTGGAGCTGCAACCAATGATTCCCACGTTGATATATTACTAGATATTTTGGCTGAGTGGGAAGGGCTCTTTGTTATGGAGAGAAACGAAGTCTCCTCTGCAGAAACAAGTGGAGAAAATGACTGGAATAATGATGGTTGGGAAAGCTTTCAAGAAATAAAATCGATTGAGAAGGAGACGCCAGAGATGTTTGCATCCATTCACCCTCTACATTTGTGTTGGGTGGAAATTTTCAAAATATTGATTTCTTTATCACGGTTTACAACCCTACTAAATTTGATTGACCAATCCTTAACAAAACAAAATGGAATATTGCTTGATGAAGATGATACCAGATGCTTGACTCACTTGTTGATTGACAAAGATTGTTTCGTATGTTTAAAGATGTTGCTGTTATTGCCTTGTGAAGGTTTGAGATTTGAGTGTCTTGACACAGTTGAAGCCAAGTTGAAACAAGAAGGAATATCAGATGCATTAAGCGTTGACATTCAACTTCTAATTCTTCTATTATCCTCTGGAGTCATATCGATTATTGTGACAAACCCATCCTATGATAGTATTTTCTCATATCTCTGTCATTTAGTTGGGAAGTTTTCTCATCATTTTCAAGCCATTCAGTTGTCAAAACTCTCTCTCATGCAAAGCTATGAACCCCAAAACAAATCATTGGACTCGCTTCATCTCTTCAGAAAAGTCGTCTTCCCTTGTCTCATATCAGAGCTCGTGAAGGCTGATCAGCATGTTCTAGCAGCATTTATTGTCACAAAGCTGATGCGCACAAATTCTTCATTCAGTCTTATCAATATTGCGGAGGCCAGTCTTTGCAGGTATCTGGAGAGGGAACTCCACGCCTTAGAGGATGATAATGATGAGTTCTGGAAGACAGAAATTTGTATAGAAATGACATTAAAAAACTCAGTTTCTAAATTAAGAGGGATGTTGAGAAGTTTTATCGAATCTGCACTGCGTTTGCTTTGA 6468 38.08 SLKFQGKKFICSNIVLIMEDPVRKVLYETRLHASRPYTPNYPPQQVLHLLFSLCFMNLKEKLSEYRYNQPRKVKRLISLYISPRGEHVAVATGNHLTIFRKTDDYHEPFGSFTNPVLTTFSIGTWSESHDVLGVVDDTETLYFIKTNGEEITRITRRQLKVPSPIIGLIAWENFDTQRSYLCSFIIITSDGSLQLMEIGHDPSISMLSVCISNNELAMKSQFPSRIFCCDFHPDLSVLVIIGSPCHLSVWRISRNLDLEPLFSLQFGGFYVKPNGHGGQISYRKLQISPLAQFVATLDVTGCLYIFKLDKKHFTVSNFYFSEQDNTNVENCFPTEKKDFPNDVWDFTWWSDHILIIAKRCGIVIMIDILSGRKIQEDGPKYLLPILERAKYVPGHLFLLGSTVYKEKLDSSKGADYDECNEFNLITEDTHNHCDISKLKWHLETFSEKSVSEMYNILISSKKYQEALEFADCYGLDKDEVLKSQWLNSEQGIEEIDTFLADVKDKVFVLSECVNKVGLTEESVKALLSHGLQITDQCRFSDSEDHQDDEIARLQILQFRDKLETYLGINMGRYSMEEYRKFRIVPMHEVALTLAQSGKIGALNLLFKRHPYSLYSTMLEVLTAIPETIPVQTYGQLLPGKSPPTTIAVREKDWVECAKMIRFISQSSDNSGVGMQVKVPKPLNFFLEAHADGKGVKQIFRLILSKFSRRQPVRSDIDWANMWRDMQYLRDKAFPFLDLEYMLFEFCRGLLKAGKFSLARNYLRGTSSVSLASDKAENLVIQAAKEYFFAAPSLSCPEIWKAKECLNLFPSRNTRAELDIIEVITIKLPSLGVTILPMQFRQIKDPLEVVKKAISCQTGAYLHVDELIEVAKLLGLNSIDDVSAVEEAIAREAAVAGDLQLAFDLCLVLAKKGHGSIWDLCAAIARGPALENMDVTSRKQLLGFALSHCDEESISELLYAWKDLDMQGQCETLMNLTGRSSSNFSFQSSLHSTQNIVDEKQCYTFLQDNCGEVQEIEMDKLRGSIYDVAKKLPIENKMSLESFFGENGKVVVFAASQLPWLIELSIKGENEKKMIPGKKYASVRTQAMVTILSWLARNGFVPTDRLIASLAQSVIEPPVTKEDDLIGGFLLLNLMDALNGVEIIEEQLRARVNYSEVCSITNVGMTYCSLHNSGVECESPAQRRELLMRKFRGKHLSPSSDENIKLGKVQSSFWRQWKVKLEEQKRVADHSRALENILPGVETARVLSGDSNYISSVVHSLIESVMLEKKHIIKDVLKLADTYGLERIKVLLNYVTSILISEIWSNDDIMVEIAEFRHELIDCAAETIKAISMSVYSAIDGYNKLRLSYVYGLLHDCYSKLEKTGELVSMAHHSEIRVTSFGFSHFFEIVGQECKKVAFIKNLNYKNIVGLGDLNFKCFSQEVYANVDENNLEALAKMVESLISLYVEPVPEGLISWQDVYKFFVLNLLTTLETRFTTDFNFKSPEDLQDLVSQLEHSVDSCRMYIRFLTRSDAVHTLKRYFTIIIPLYSSCAEVPDNSAWQDCLITLLHFWIRLALELKEVIYHGKPKKNSMCSPDCLTSCLEVFIRLVKEDSISPSQGWATTVNYAKNGLIGDLSQEAFIFCKAMVLSACGFGAVGEVFSETVSRLSTLSTLSTEMEVQDLPHLYLKVFETILDELLSCAHEHQNLHHLLSSLSKLEGDLEELRRVRQLVWERMAEFSDDLQIPSSIRVYVLELMQFIADKSIKGFSAEIQYNVQSWEGWDAFQYRSKESETVGPGPILSDHKDASSRLTSTLVSLKSSRLVSMISPSLEVKSDNLLTVETTFACFLRLCGAATNDSHVDILLDILAEWEGLFVMERNEVSSAETSGENDWNNDGWESFQEIKSIEKETPEMFASIHPLHLCWVEIFKILISLSRFTTLLNLIDQSLTKQNGILLDEDDTRCLTHLLIDKDCFVCLKMLLLLPCEGLRFECLDTVEAKLKQEGISDALSVDIQLLILLLSSGVISIIVTNPSYDSIFSYLCHLVGKFSHHFQAIQLSKLSLMQSYEPQNKSLDSLHLFRKVVFPCLISELVKADQHVLAAFIVTKLMRTNSSFSLINIAEASLCRYLERELHALEDDNDEFWKTEICIEMTLKNSVSKLRGMLRSFIESALRLL 2155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46577841 46590082 + Bma005421.1 Bma10g01310 90373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01310 2155 PANTHER NEUROBLASTOMA-AMPLIFIED SEQUENCE 675 2108 - -
Bma10g01310 2155 PANTHER NEUROBLASTOMA-AMPLIFIED SEQUENCE 18 668 - -
Bma10g01310 2155 Coils Coil 1687 1707 - -
Bma10g01310 2155 Pfam Secretory pathway protein Sec39 671 905 IPR013244 GO:0006890
Bma10g01310 2155 SUPERFAMILY WD40 repeat-like 43 367 IPR036322 GO:0005515
Bma10g01310 2155 Gene3D - 74 381 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01310 K20473 NBAS; neuroblastoma-amplified sequence - qsu:112030867 1803.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1000 . . Bda05g00133 . . . Bma10g01310 . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1004 Cone5ag0712 . . . . . . Blo07g00325 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010152 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31