Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01311 ATGAACTATATTATTGGAGCTTTTAAGCCATCTTGTAACATCTCAATCACATTCTCTGACGGGAAAACTCGCAAGCAGGTTCCATTGAAGAAAGAAAATGGTCAAACAGTTATGGTCCCTCTTTTTCAAAGTCAAGAAAACATTAGTGGAAAGATATCCATAGAACCCGTTCAAGGGAAAAAGGTTGAACACAATGGTGTAAAAGTTGAGCTGCTTGGTCAGATAGAGATGTATTTTGATAAAAACAACTTTTATGACTTCACTTCTCTTGTTCGTGAACTTGACGTTCCTGGAGAAATATATGAGAAGAAAACATATCCATTCGAGTTTTCTACTGTGGAAATGCCATATGAGACATATAATGGTGTTAATGTAAGACTTAGGTATGTGTTGAAAGTTACAGTCACTCGTCCTTATGCTGGTCTCATCGTGGAATATCAAGATTTTGTGGTTCGGAACTATACACCAACTCCATCAATTAACAATAGTATCAAGATGGAAGTTGGCATTGAAGATTGTCTTCATATTGAGTTTGAGTATAACAAAAGCAAGTATCATCTCAAAGACGTCATTATTGGAAAAATATACTTTCTTCTTGTAAGAATCAAGATAAAAAATATGGACTTGGAAATAAGACGCAGAGAATCGACTGGAGCAGGTGCCAACACGCACATCGAGACAGAGACGCTTGCTAAATTTGAATTGATGGATGGTGCTCCTGTTAGAGGTGAATCAATTCCAATCAGACTGTTTCTAAGCCCTTATGATCTGACTCCGACACACCGCAATATCAATAACAAATTCAGTGTCAAGTATTACTTGAATCTGGTACTAGTGGACGAAGAAGATCGACGCTATTTTAAGCAGCAGGAAATCACAATATACAGGCTTCAAGAGACGGCTTGA 906 37.42 MNYIIGAFKPSCNISITFSDGKTRKQVPLKKENGQTVMVPLFQSQENISGKISIEPVQGKKVEHNGVKVELLGQIEMYFDKNNFYDFTSLVRELDVPGEIYEKKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVTRPYAGLIVEYQDFVVRNYTPTPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGAGANTHIETETLAKFELMDGAPVRGESIPIRLFLSPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQETA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46592911 46595912 - Bma005422.1 Bma10g01311 90374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01311 301 Gene3D - 157 301 IPR014752 -
Bma10g01311 301 Pfam Vacuolar protein sorting-associated protein 26 8 283 IPR028934 GO:0006886
Bma10g01311 301 PANTHER VACUOLAR PROTEIN SORTING 26A-RELATED 1 301 - -
Bma10g01311 301 SUPERFAMILY E set domains 46 141 IPR014756 -
Bma10g01311 301 Gene3D - 1 155 IPR014752 -
Bma10g01311 301 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 1 301 IPR028934 GO:0006886
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01311 K18466 VPS26A_B; vacuolar protein sorting-associated protein 26A/B - twl:120004604 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01311 Bma-Chr10:46592911 Bma14g02021 Bma-Chr14:43565363 2.10E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g996 . . Bda05g00134 Bda07g01949 . . Bma10g01311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004794 3 2 1 1 0 1 2 1 1 1 1 1 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40