Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01318 ATGGCTGTTGCTGAGAATGCTGGAGCCAGAATCGGCTCGTCGAGTCAAAGTTTGGACAATTCTACAGTGACATCTAATTCAGCAACTGTTGAAAACCAAAAACCCAGAAACGATCCTGAGGTTTTGAGTCTAGAATCCAATTTCCATCTAAACGGTGGCGATCGGGGTCATCTGCAACAGATAGGCGGCGCAAATACTGTATCAGTCGGCCCCAACAACTACAAGGTTCCAATGGGTCAAATGCAAAATGGGTATGAAGCGAATGGGGTCAAGAGCCCGCAGATGGTGGTAAGGTCTAATGGCATTAGCAACGGCGAGGATGGGAATAACAGTTTTAAGAGGGAGATGAGGGATTTGGAGGAGCTGTTATCCAAGTTGAATCCCATGGCCGAGGAATTCGTACCTCCCTCCCTTGCCAAAAATCTCCATGGCTACCTAACTGATGGTGGGTTTGGATTTTCAAACAACTTGCTGCTGCAAACTAATTCTGGCAATGCCAATGGAATTATTAATCGGAGGAAGAAGAATGGCTTCAGCCAAGGGAGGCGTAGGATGAATTATAAAATGACTGCAGCACAACGAGATGAGATGACTAGGAGGACTGTATATGTATCTGATATTGATCAGCAGGTCACTGAAGAGCAACTTGCCGCACTCTTTCTCAACTGTGGACAGGTCGTTGATTGTCGTATTTGCGGTGATCCTAACTCCATTCTTCATTTTGCCTTTATTGAGTTTACTGATGATGAGGGTGCAAGGGCTGCTTTGAATCTGTCAGGAACTATGCTTGGTTATTACCCAGTGAGAGTGCTCCCTTCAAAAACTGCAATTGCACCTGTTAATCCAGAATTTTTGCCTAGGTCTGCAGATGAGCGTGAAATGTGTTCAAGGACTATCTATTGTACAAATATTGACAAGAAGGTGGTTACTCAGGCAGAAGTCAAACTTTTCTTTGAGTCATTGTGCGGGGAGGTTCAACGACTTAGGCTACTGGGAGACTACCATCACTCCACTCGTATATCGTTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGTGGCGTGGTTTTGGGTGCACTCCCTATAAGGGTAAGCCCATCGAAGACTCCAGTCCGCCCTCGTTCCCCGCGCCCTCAAATGCACTGA 1161 45.99 MAVAENAGARIGSSSQSLDNSTVTSNSATVENQKPRNDPEVLSLESNFHLNGGDRGHLQQIGGANTVSVGPNNYKVPMGQMQNGYEANGVKSPQMVVRSNGISNGEDGNNSFKREMRDLEELLSKLNPMAEEFVPPSLAKNLHGYLTDGGFGFSNNLLLQTNSGNANGIINRRKKNGFSQGRRRMNYKMTAAQRDEMTRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRICGDPNSILHFAFIEFTDDEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPEFLPRSADEREMCSRTIYCTNIDKKVVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRISFVEFTMAESAIAALNCSGVVLGALPIRVSPSKTPVRPRSPRPQMH 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46822952 46826248 - Bma005434.1 Bma10g01318 90381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01318 386 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 386 - -
Bma10g01318 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 275 IPR000504 GO:0003723
Bma10g01318 386 CDD RRM2_CID8_like 293 375 IPR034825 -
Bma10g01318 386 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 386 - -
Bma10g01318 386 Pfam Ataxin-2 C-terminal region 123 137 IPR009818 -
Bma10g01318 386 Gene3D - 161 277 IPR012677 -
Bma10g01318 386 MobiDBLite consensus disorder prediction 1 41 - -
Bma10g01318 386 Gene3D - 290 370 IPR012677 -
Bma10g01318 386 MobiDBLite consensus disorder prediction 47 66 - -
Bma10g01318 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 362 IPR000504 GO:0003723
Bma10g01318 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 264 IPR000504 GO:0003723
Bma10g01318 386 MobiDBLite consensus disorder prediction 9 40 - -
Bma10g01318 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 374 IPR000504 GO:0003723
Bma10g01318 386 SMART rrm1_1 298 370 IPR000504 GO:0003723
Bma10g01318 386 SMART rrm1_1 201 271 IPR000504 GO:0003723
Bma10g01318 386 SUPERFAMILY RNA-binding domain, RBD 169 276 IPR035979 GO:0003676
Bma10g01318 386 SUPERFAMILY RNA-binding domain, RBD 287 381 IPR035979 GO:0003676
Bma10g01318 386 CDD RRM1_CID8_like 199 277 IPR034823 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01318 - - - mcha:111011617 555.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g01318 Bma14g02028 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01273 Bma-Chr6:49814697 Bma10g01318 Bma-Chr10:46822952 5.50E-08 dispersed
Bma10g00454 Bma-Chr10:5118270 Bma10g01318 Bma-Chr10:46822952 2.22E-114 dispersed
Bma10g01318 Bma-Chr10:46822952 Bma13g00905 Bma-Chr13:39338556 1.06E-125 dispersed
Bma10g01318 Bma-Chr10:46822952 Bma14g02028 Bma-Chr14:43597061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45