Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01320 ATGAAAGATGAGAGTTCGAATGGGGTTGGGGTGCGGTGGGAGAGGTTTTTGCAGCGGATGATGCTCAGGGTCTTGCTCGTCGAAGCTGATGACTCCACCAGGCAGATTATTACTGCGCTTCTCCGCAAATGTGGCTACAGAGTTGCAGCTGTTTCTGATGGCTTAAAGGCTTGGGAGTTGCTTAAGGGAAGATCTAGCAGCATTGACCTCATATTGACAGAAGTAGACCTGCCATCAATATGTGGATCTGCCCTCCTAACACTAATTATGGAGCATGACATTTGCAAAAAAATTCCTGTTATAATGATGTCCTCACAGGATTCTATCAGCACTGTGTATAAATGCATGATGAAAGGTGCTGCTGACTATCTGGTTAAACCCATTCGCAGAAATGAGTTGAGAAATCTCTGGCAGCATGTTTGGAGAAGACAATCTTCGACTGCCAGAGGAAGTGGCCCCCGACAGAGTGTTGCCCAGCAAAGAGTTGAAGTTACATCTGAAAATGAGCCTGCAAGCAACCATTCCAACCATTCAAATGGCTATGTTGCGGATGTTCATAGTCATAGAGCATGCATCGAAAAAGGGAGTGATGCACAGAGCTCTTGTACAAAGCCAGACTTGGAATCCGACAGACAGGAATCTTCTCGGGCCAACCTTGGCAGATCGTTTCTTGGTCCCCTGAAGTTACAAAGGGATGAAACTGACATCAACTTGTGCCAGAAATCGCTTATGCATGAAAATGAAGCTGCAGGTAGAGTAATTTCTCGTACTCATAGTGATTTTCTTGTATCGGTCTGGTTAGCCGCTGAAAGCCATAATACAGATGCTGATATTGCTTATGCCAATGCCAACAACGTCACCCTTATTAGTTCTTCAAGAAACACCACTGACTTAATTGGAGCATTTGCAGACTATCCGGAATGCAATCATAGAAATTCCTCTTCGAGCAACGGCACTAGCAATTTTGATAATGCTTCGGGGTTAGATCTTTCCTTGAGAAGATGTTATCCAAGTGATTTTGAGGACAATCTTATGGCAGAAAGACATACCCTCAGGCCATCTAATGCTTCAGCCTTCTCTCGATACAGTCACAGGCCCATCCAGCACCTTCAACTGAAATTTATCAAAGAAAATGGGACCAATCCCGACAAACATCTGTTTAGTATGGCTACAGGTTATGCCACTCATATCCATGATCCCAGATTAAGCATGCAACCGAGCAGCATCTCTCCGAATTCTGCTCACTCCAATCACTTGAAAATTTTATCCCCTCCAGAGAAGACATGCCCCCCGCCCATTCAGGTGAAAGGTGTACAGTTTAACAACTCAGGCTCTGGCTATGGATCTGTGCTTTCTCCAATATTTTGTGCACAATCAGGAGTATCACCAATTCCGAGCCCAAGTACAGCTGCCTATCCAATGAATTCGTTTTACCAGTCTAATCTCGAAAACATTGACTCTGAGAAACTGCCAGAGCAGCTTCATAGAAATTCCAACAATGCTGCAAACCAAGCAAGGGACATTCAGAGGCTGATATTTGAGGATCATGGACATATTTCTCCCACCACCGATGCAAGTGCCAGCAGTAGCTTTTGCAATGGCGGTGTATCTCGTATTAATGGGTTGGGATATGGAAGCCCCTCCGCCAGCAACTTCAATGTTCATCAGGTGCCCGTAGTCTCGAGTATAGCAGATAGCAAGAATGAAGAAGTGGATCTCCATGGCATGAAAGATCTTCATCGATCTATGCAAAGAGAAGTAGCATTAACTAAGTTTCGCTTGAAGCGTAAAGATAGATGCTACGAGAAAAAGGTACGATACGAGAGCCGGAAGAAGCTAGCGGAGCAACGTCCAAGAGTGAAAGGACAATTTGTTCGACAGTTGAACGTCAATCCACGGCCCGCACAAACCAATGAAAGTTAG 1923 44.88 MKDESSNGVGVRWERFLQRMMLRVLLVEADDSTRQIITALLRKCGYRVAAVSDGLKAWELLKGRSSSIDLILTEVDLPSICGSALLTLIMEHDICKKIPVIMMSSQDSISTVYKCMMKGAADYLVKPIRRNELRNLWQHVWRRQSSTARGSGPRQSVAQQRVEVTSENEPASNHSNHSNGYVADVHSHRACIEKGSDAQSSCTKPDLESDRQESSRANLGRSFLGPLKLQRDETDINLCQKSLMHENEAAGRVISRTHSDFLVSVWLAAESHNTDADIAYANANNVTLISSSRNTTDLIGAFADYPECNHRNSSSSNGTSNFDNASGLDLSLRRCYPSDFEDNLMAERHTLRPSNASAFSRYSHRPIQHLQLKFIKENGTNPDKHLFSMATGYATHIHDPRLSMQPSSISPNSAHSNHLKILSPPEKTCPPPIQVKGVQFNNSGSGYGSVLSPIFCAQSGVSPIPSPSTAAYPMNSFYQSNLENIDSEKLPEQLHRNSNNAANQARDIQRLIFEDHGHISPTTDASASSSFCNGGVSRINGLGYGSPSASNFNVHQVPVVSSIADSKNEEVDLHGMKDLHRSMQREVALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRQLNVNPRPAQTNES 640
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 46835309 46838087 + Bma005436.1 Bma10g01320 90383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01320 640 Gene3D - 20 259 - -
Bma10g01320 640 CDD psREC_PRR 24 127 - -
Bma10g01320 640 MobiDBLite consensus disorder prediction 144 180 - -
Bma10g01320 640 MobiDBLite consensus disorder prediction 195 219 - -
Bma10g01320 640 ProSiteProfiles Response regulatory domain profile. 23 141 IPR001789 GO:0000160
Bma10g01320 640 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 11 617 - -
Bma10g01320 640 Pfam Response regulator receiver domain 24 135 IPR001789 GO:0000160
Bma10g01320 640 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 617 IPR045279 GO:0009736
Bma10g01320 640 MobiDBLite consensus disorder prediction 611 640 - -
Bma10g01320 640 SUPERFAMILY CheY-like 15 146 IPR011006 -
Bma10g01320 640 SMART REC_2 22 137 IPR001789 GO:0000160
Bma10g01320 640 Pfam CCT motif 585 627 IPR010402 GO:0005515
Bma10g01320 640 ProSiteProfiles CCT domain profile. 585 627 IPR010402 GO:0005515
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00931 Bma-Chr4:13096607 Bma10g01320 Bma-Chr10:46835309 7.72E-102 dispersed
Bma05g01202 Bma-Chr5:51449544 Bma10g01320 Bma-Chr10:46835309 3.15E-109 dispersed
Bma10g01320 Bma-Chr10:46835309 Bma07g00742 Bma-Chr7:20021750 6.93E-21 dispersed
Bma03g00101 Bma-Chr3:830343 Bma10g01320 Bma-Chr10:46835309 2.73E-18 transposed
Bma04g00577 Bma-Chr4:5325270 Bma10g01320 Bma-Chr10:46835309 1.45E-15 transposed
Bma12g00984 Bma-Chr12:41886543 Bma10g01320 Bma-Chr10:46835309 2.45E-15 transposed
Bma10g01320 Bma-Chr10:46835309 Bma14g02030 Bma-Chr14:43603874 3.91E-121 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57994 PF00072 Response_reg 1.90E-21 CL0304 Bma TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01320 K12130 - zju:107414998 619.002