Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01322 ATGGCAAACTCGAGTCAAGAATCCCTCCTCAAATCGGATAACTCGGTCAGCTACGAGTCCCCCCACCAACTCTACGCCATGGCCATATCTTCTTCTTCCCCCGCCCGCACCCACCACCCCATAGCTCTCGGCAGCTTCATTGAGGATTATCCCAACCGCGTTGACGTCGTCTTCTTCGATCCCGACTCCCTCTCCCTCACCACCAACCCCTCCCTCTCCTTCGACCACCCCTATCCCCCCACCAAGCTCATGTTCCACCCCTCCCCCTCCTCCGACCTCCTCGTCTCCTCCGGCGACTTTCTTCGCCTCTGGGACCTTCGCGACTCTTCCATCGAGCCCCTCTCCGTCCTCAACAACAGCAAGACCTCCGAGTTTTCCGCCCCCCTCACCTCCTTCGACTGGAACGAGGTGGAGCCCAAGCGGATCGGGACCTCGAGCATCGACACCACCTGCACCATTTGGGACGTCGAAAGGGGCGTCGTTGAGACCCAGCTCATTGCTCATGACAAGGAGGTGTACGACATTGCGTGGGGGGAGGCGAGAGTGTTCGCCTCCGTTTCCGCTGATGGGTCGGTCCGAATATTCGATTTGAGGGACAAGGAGCACTCCACCATCATATACGAAAGTCCACAACCGGACACCCCTTTGCTTAGGCTGGCCTGGAACAAGCAGGACTTGCGATACATGGCCACAACCTTGATGGACAGCAACAAAATTGTTATTTTGGACATAAGATCCCCAACCATGCCCGTTGCGGAGCTCGAAAGGCACCATGCCAGTGTAAATGCCATCGCCTGGGCTCCTCAGAGCTGCAGGCACATTTGTTCGGCTGGGGATGATGCCCACACCCTTATTTGGGAGTTGCCCACTGTTGCAGGCCCTAATGGAATCGATCCAACTTCTATGTATTCTGCCGACTCTGAGATTAACCAGCTCCAGTGGTCTGCAGCGCAGCCTGAGTGGATAGCAATTGCATATTCAAATAAGATGCGGCTTTTGAAGGTCTGA 1008 56.05 MANSSQESLLKSDNSVSYESPHQLYAMAISSSSPARTHHPIALGSFIEDYPNRVDVVFFDPDSLSLTTNPSLSFDHPYPPTKLMFHPSPSSDLLVSSGDFLRLWDLRDSSIEPLSVLNNSKTSEFSAPLTSFDWNEVEPKRIGTSSIDTTCTIWDVERGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATTLMDSNKIVILDIRSPTMPVAELERHHASVNAIAWAPQSCRHICSAGDDAHTLIWELPTVAGPNGIDPTSMYSADSEINQLQWSAAQPEWIAIAYSNKMRLLKV 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46840681 46841688 - Bma005438.1 Bma10g01322 90385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01322 335 SMART WD40_4 67 105 IPR001680 GO:0005515
Bma10g01322 335 SMART WD40_4 110 155 IPR001680 GO:0005515
Bma10g01322 335 SMART WD40_4 158 196 IPR001680 GO:0005515
Bma10g01322 335 SMART WD40_4 247 287 IPR001680 GO:0005515
Bma10g01322 335 Pfam WD domain, G-beta repeat 165 196 IPR001680 GO:0005515
Bma10g01322 335 Pfam WD domain, G-beta repeat 252 286 IPR001680 GO:0005515
Bma10g01322 335 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Bma10g01322 335 Gene3D - 115 333 IPR015943 GO:0005515
Bma10g01322 335 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 335 IPR031104 -
Bma10g01322 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 205 IPR001680 GO:0005515
Bma10g01322 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 288 IPR001680 GO:0005515
Bma10g01322 335 PANTHER WD REPEAT CONTAINING PROTEIN 1 335 IPR045159 -
Bma10g01322 335 SUPERFAMILY WD40 repeat-like 56 330 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01322 K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7 - zju:107407644 580.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01237 Bma-Chr1:15550236 Bma10g01322 Bma-Chr10:46840681 1.81E-142 dispersed
Bma10g00109 Bma-Chr10:1041054 Bma10g01322 Bma-Chr10:46840681 3.14E-120 dispersed
Bma10g01322 Bma-Chr10:46840681 Bma06g00863 Bma-Chr6:43300547 6.71E-11 dispersed
Bma10g01322 Bma-Chr10:46840681 Bma02g00662 Bma-Chr2:18760808 8.95E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g958 . . Bda05g00144 . . . Bma10g01322 . Cmo16g00019 . . . . . . . Cpe14g00015 . . . . . . . . . . . . . . Cone1ag1023 Cone5ag0730 . . . . . . Blo07g00313 . . . . . . . . . . Cma16g00016 . Car16g00016 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001974 2 3 2 4 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 1 2 2 3 1 66