Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00018 | ATGGAGGCTAGGGGTAATGGAACAACCAGTTTGACGGATTTTGGAGAAAACAGTAACGGGCTTCGTTCGATGATGACGATGATGCATGGTATGAGTTCCCACCATCCTCATACTAACTCAGACGCAGACAATAGCGCTTCCTTTCTCTCTCTGCCTTCCTCAACCACCAACAAGGCCGATCCAACTCGTAATAGTAGCAGCGGCTGTTCTCTCGTGGTCGACGGCCGGCACAACAACAGTGCATGGTGTTATTTCATGGACAGCCAGAATAATAGTGAAAACAACTCTTCCTCAGCGCTCAAGGCTAAGATCATGGCTCATCCTCACTACCATCGCCTCTTAACCGCGTATCTCAATTGTCAAAAGGTTGGGGCTCCGCCGGAAGTGATTCTGAAGCTAGAAGAAGCATGTGCTTCGGCTGCTTCAATGGGCCCCGCCGGCACAGGATGTCTCGGGGAAGATCCGGCTCTCGACCAGTTCATGGAAGCCTACTGTGAGATGCTGATCAAATACGAGCAAGAGCTCGCAAAACCTTTCAAGGAAGCCATGCTTTTTCTTCAAAAGATAGAGCGCCAGTTCAAAGACCTTATTGTTTCTTCAGATACTGGTTGTGAGGAAGGTGAAAGGAATGGATCATCATCAGAAGAAGTCGATATAGTGAACCAGTCCATTGATCCCCATGCAGAAGATAGGGAACTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGGAGCCTTAAGCAGGAATTCATGAAGAAGCGAAAGAAAGGGAAGTTGCCAAAAGAAGCCAGACAACAGTTGCTGGATTGGTGGACTAGACATTACAAGTGGCCTTACCCTTCGGAGGCGCAGAAGGTGGCCCTGGCGGAATCAACTGGTTTGGATCAGAAGCAGATAAACAACTGGTTTATAAATCAAAGGAAAAGGCACTGGAAGCCGTCGGAAGACATGCAGTTTGTGGTGATGGATGCCACTCATTCTCACCCCCAGTATTTCATGGACGGCGTCTTCGCCAGTCCTTTTGCCTTGGGCGTCGGCCCCACCTTGCTCTGA | 1059 | 49.29 | MEARGNGTTSLTDFGENSNGLRSMMTMMHGMSSHHPHTNSDADNSASFLSLPSSTTNKADPTRNSSSGCSLVVDGRHNNSAWCYFMDSQNNSENNSSSALKAKIMAHPHYHRLLTAYLNCQKVGAPPEVILKLEEACASAASMGPAGTGCLGEDPALDQFMEAYCEMLIKYEQELAKPFKEAMLFLQKIERQFKDLIVSSDTGCEEGERNGSSSEEVDIVNQSIDPHAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWTRHYKWPYPSEAQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHSHPQYFMDGVFASPFALGVGPTLL | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 439380 | 441519 | - | Bma005485.1 | Bma11g00018 | 90420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00018 | 352 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Bma11g00018 | 352 | SUPERFAMILY | Homeodomain-like | 254 | 329 | IPR009057 | - | |
Bma11g00018 | 352 | SMART | HOX_1 | 254 | 319 | IPR001356 | GO:0003677 | |
Bma11g00018 | 352 | PANTHER | - | 6 | 341 | - | - | |
Bma11g00018 | 352 | Pfam | ELK domain | 232 | 253 | IPR005539 | GO:0003677 | |
Bma11g00018 | 352 | SMART | KNOX2_2 | 147 | 198 | IPR005541 | GO:0003677|GO:0005634 | |
Bma11g00018 | 352 | CDD | homeodomain | 264 | 316 | IPR001356 | GO:0003677 | |
Bma11g00018 | 352 | SMART | ELK_2 | 232 | 253 | IPR005539 | GO:0003677 | |
Bma11g00018 | 352 | ProSiteProfiles | 'Homeobox' domain profile. | 252 | 315 | IPR001356 | GO:0003677 | |
Bma11g00018 | 352 | Pfam | Homeobox KN domain | 272 | 311 | IPR008422 | GO:0003677|GO:0006355 | |
Bma11g00018 | 352 | ProSitePatterns | 'Homeobox' domain signature. | 290 | 313 | IPR017970 | GO:0000981|GO:0006355 | |
Bma11g00018 | 352 | ProSiteProfiles | ELK domain profile. | 232 | 252 | IPR005539 | GO:0003677 | |
Bma11g00018 | 352 | SMART | KNOX1_2 | 98 | 142 | IPR005540 | GO:0003677|GO:0005634 | |
Bma11g00018 | 352 | Pfam | KNOX2 domain | 151 | 196 | IPR005541 | GO:0003677|GO:0005634 | |
Bma11g00018 | 352 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 6 | 341 | - | - | |
Bma11g00018 | 352 | Gene3D | - | 257 | 319 | - | - | |
Bma11g00018 | 352 | Pfam | KNOX1 domain | 99 | 138 | IPR005540 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00018 | Bma-Chr11:439380 | Bma14g01797 | Bma-Chr14:38552455 | 1.42E-72 | dispersed | |
Bma11g00018 | Bma-Chr11:439380 | Bma07g00020 | Bma-Chr7:1185128 | 2.08E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57998 | PF03791 | KNOX2 | 4.10E-20 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00018 | - | - | rcu:8277968 | 485.723 |