Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00018 ATGGAGGCTAGGGGTAATGGAACAACCAGTTTGACGGATTTTGGAGAAAACAGTAACGGGCTTCGTTCGATGATGACGATGATGCATGGTATGAGTTCCCACCATCCTCATACTAACTCAGACGCAGACAATAGCGCTTCCTTTCTCTCTCTGCCTTCCTCAACCACCAACAAGGCCGATCCAACTCGTAATAGTAGCAGCGGCTGTTCTCTCGTGGTCGACGGCCGGCACAACAACAGTGCATGGTGTTATTTCATGGACAGCCAGAATAATAGTGAAAACAACTCTTCCTCAGCGCTCAAGGCTAAGATCATGGCTCATCCTCACTACCATCGCCTCTTAACCGCGTATCTCAATTGTCAAAAGGTTGGGGCTCCGCCGGAAGTGATTCTGAAGCTAGAAGAAGCATGTGCTTCGGCTGCTTCAATGGGCCCCGCCGGCACAGGATGTCTCGGGGAAGATCCGGCTCTCGACCAGTTCATGGAAGCCTACTGTGAGATGCTGATCAAATACGAGCAAGAGCTCGCAAAACCTTTCAAGGAAGCCATGCTTTTTCTTCAAAAGATAGAGCGCCAGTTCAAAGACCTTATTGTTTCTTCAGATACTGGTTGTGAGGAAGGTGAAAGGAATGGATCATCATCAGAAGAAGTCGATATAGTGAACCAGTCCATTGATCCCCATGCAGAAGATAGGGAACTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGGAGCCTTAAGCAGGAATTCATGAAGAAGCGAAAGAAAGGGAAGTTGCCAAAAGAAGCCAGACAACAGTTGCTGGATTGGTGGACTAGACATTACAAGTGGCCTTACCCTTCGGAGGCGCAGAAGGTGGCCCTGGCGGAATCAACTGGTTTGGATCAGAAGCAGATAAACAACTGGTTTATAAATCAAAGGAAAAGGCACTGGAAGCCGTCGGAAGACATGCAGTTTGTGGTGATGGATGCCACTCATTCTCACCCCCAGTATTTCATGGACGGCGTCTTCGCCAGTCCTTTTGCCTTGGGCGTCGGCCCCACCTTGCTCTGA 1059 49.29 MEARGNGTTSLTDFGENSNGLRSMMTMMHGMSSHHPHTNSDADNSASFLSLPSSTTNKADPTRNSSSGCSLVVDGRHNNSAWCYFMDSQNNSENNSSSALKAKIMAHPHYHRLLTAYLNCQKVGAPPEVILKLEEACASAASMGPAGTGCLGEDPALDQFMEAYCEMLIKYEQELAKPFKEAMLFLQKIERQFKDLIVSSDTGCEEGERNGSSSEEVDIVNQSIDPHAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWTRHYKWPYPSEAQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHSHPQYFMDGVFASPFALGVGPTLL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 439380 441519 - Bma005485.1 Bma11g00018 90420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00018 352 MobiDBLite consensus disorder prediction 1 67 - -
Bma11g00018 352 SUPERFAMILY Homeodomain-like 254 329 IPR009057 -
Bma11g00018 352 SMART HOX_1 254 319 IPR001356 GO:0003677
Bma11g00018 352 PANTHER - 6 341 - -
Bma11g00018 352 Pfam ELK domain 232 253 IPR005539 GO:0003677
Bma11g00018 352 SMART KNOX2_2 147 198 IPR005541 GO:0003677|GO:0005634
Bma11g00018 352 CDD homeodomain 264 316 IPR001356 GO:0003677
Bma11g00018 352 SMART ELK_2 232 253 IPR005539 GO:0003677
Bma11g00018 352 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Bma11g00018 352 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Bma11g00018 352 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
Bma11g00018 352 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
Bma11g00018 352 SMART KNOX1_2 98 142 IPR005540 GO:0003677|GO:0005634
Bma11g00018 352 Pfam KNOX2 domain 151 196 IPR005541 GO:0003677|GO:0005634
Bma11g00018 352 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 341 - -
Bma11g00018 352 Gene3D - 257 319 - -
Bma11g00018 352 Pfam KNOX1 domain 99 138 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00018 Bma-Chr11:439380 Bma14g01797 Bma-Chr14:38552455 1.42E-72 dispersed
Bma11g00018 Bma-Chr11:439380 Bma07g00020 Bma-Chr7:1185128 2.08E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57998 PF03791 KNOX2 4.10E-20 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00018 - - rcu:8277968 485.723