Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00043 ATGCATTCTCGTCGTGATATCCAGATTCATGCCAGCGATGGCTCTAATCTCACCAGCGATCACGTTCGCGGAGGAGACCCCTGTCTCGTCTTAACTTCCGATCCGAAACCCCGCCTCCGTTGGACTGTCGATCTTCACGAGCGATTTGTTGATGCTGTCACTCAGCTCGGTGGCCCAACTAAAGCTACGCCAAAGGCTATTATGCGAACAATGAATGTGAAGGGTCTGACTCTGTTTCATTTAAAAAGTCACCTCCAGAAATACAGATTAGGGAAGCAATCAGGGAAAGATTTGAGCGAGTCACTTGATGATGGAACTTCAGGCTCGTACCTTTTAGACAATCCTGGTACCAACAAGATTCCTTCTGACTTGCAAACTACTGATGTGAACGATGGTTATGAAGTCAAAGAAGCATTAAGAGTCCAGATGGAAGTGCAAGGCAAGTTACATCTGCAAGTTGAGGCAGAGAAGCATTTACTGCTTCGCCAGGATGCAGAGAAAAGGTATTTAAGTTTGCTGGAAACAGCTTGTAAGATGCTTGCAGACCAATTTATTGGAAATGAGGATATGGATATGGAAAGCCAACAATCTCATGGATTGGGCGCTAGAAATTCAAGAAACTCCTCTGAGTACCCACTTGGCTTTTATTCAATACAATCATACGAGGCTGCTGCTGGAGAGTGTGGGGCGCAAGTGCAAGGTAGTCTCTACCTTCAAAGGGCTGACTGTTCCACTGAAAGCTGCCTGACTAAGTGA 756 45.9 MHSRRDIQIHASDGSNLTSDHVRGGDPCLVLTSDPKPRLRWTVDLHERFVDAVTQLGGPTKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDLSESLDDGTSGSYLLDNPGTNKIPSDLQTTDVNDGYEVKEALRVQMEVQGKLHLQVEAEKHLLLRQDAEKRYLSLLETACKMLADQFIGNEDMDMESQQSHGLGARNSRNSSEYPLGFYSIQSYEAAAGECGAQVQGSLYLQRADCSTESCLTK 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 576963 579947 + Bma005510.1 Bma11g00043 90445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00043 251 Gene3D - 35 93 - -
Bma11g00043 251 MobiDBLite consensus disorder prediction 100 122 - -
Bma11g00043 251 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Bma11g00043 251 MobiDBLite consensus disorder prediction 93 122 - -
Bma11g00043 251 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Bma11g00043 251 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Bma11g00043 251 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Bma11g00043 251 MobiDBLite consensus disorder prediction 1 22 - -
Bma11g00043 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Bma11g00043 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 250 IPR044848 GO:0003700
Bma11g00043 251 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 18 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01204 Bma-Chr2:54120400 Bma11g00043 Bma-Chr11:576963 9.23E-69 dispersed
Bma11g00043 Bma-Chr11:576963 Bma12g00569 Bma-Chr12:24779078 2.12E-51 dispersed
Bma11g00043 Bma-Chr11:576963 Bma06g01283 Bma-Chr6:49912101 1.47E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58000 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00043 - - rcn:112165644 323.168