Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00043 | ATGCATTCTCGTCGTGATATCCAGATTCATGCCAGCGATGGCTCTAATCTCACCAGCGATCACGTTCGCGGAGGAGACCCCTGTCTCGTCTTAACTTCCGATCCGAAACCCCGCCTCCGTTGGACTGTCGATCTTCACGAGCGATTTGTTGATGCTGTCACTCAGCTCGGTGGCCCAACTAAAGCTACGCCAAAGGCTATTATGCGAACAATGAATGTGAAGGGTCTGACTCTGTTTCATTTAAAAAGTCACCTCCAGAAATACAGATTAGGGAAGCAATCAGGGAAAGATTTGAGCGAGTCACTTGATGATGGAACTTCAGGCTCGTACCTTTTAGACAATCCTGGTACCAACAAGATTCCTTCTGACTTGCAAACTACTGATGTGAACGATGGTTATGAAGTCAAAGAAGCATTAAGAGTCCAGATGGAAGTGCAAGGCAAGTTACATCTGCAAGTTGAGGCAGAGAAGCATTTACTGCTTCGCCAGGATGCAGAGAAAAGGTATTTAAGTTTGCTGGAAACAGCTTGTAAGATGCTTGCAGACCAATTTATTGGAAATGAGGATATGGATATGGAAAGCCAACAATCTCATGGATTGGGCGCTAGAAATTCAAGAAACTCCTCTGAGTACCCACTTGGCTTTTATTCAATACAATCATACGAGGCTGCTGCTGGAGAGTGTGGGGCGCAAGTGCAAGGTAGTCTCTACCTTCAAAGGGCTGACTGTTCCACTGAAAGCTGCCTGACTAAGTGA | 756 | 45.9 | MHSRRDIQIHASDGSNLTSDHVRGGDPCLVLTSDPKPRLRWTVDLHERFVDAVTQLGGPTKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDLSESLDDGTSGSYLLDNPGTNKIPSDLQTTDVNDGYEVKEALRVQMEVQGKLHLQVEAEKHLLLRQDAEKRYLSLLETACKMLADQFIGNEDMDMESQQSHGLGARNSRNSSEYPLGFYSIQSYEAAAGECGAQVQGSLYLQRADCSTESCLTK | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 576963 | 579947 | + | Bma005510.1 | Bma11g00043 | 90445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00043 | 251 | Gene3D | - | 35 | 93 | - | - | |
Bma11g00043 | 251 | MobiDBLite | consensus disorder prediction | 100 | 122 | - | - | |
Bma11g00043 | 251 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 36 | 91 | IPR006447 | GO:0003677 | |
Bma11g00043 | 251 | MobiDBLite | consensus disorder prediction | 93 | 122 | - | - | |
Bma11g00043 | 251 | Pfam | Myb-like DNA-binding domain | 39 | 89 | IPR001005 | - | |
Bma11g00043 | 251 | Pfam | MYB-CC type transfactor, LHEQLE motif | 134 | 179 | IPR025756 | - | |
Bma11g00043 | 251 | SUPERFAMILY | Homeodomain-like | 36 | 92 | IPR009057 | - | |
Bma11g00043 | 251 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bma11g00043 | 251 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 33 | 93 | IPR017930 | - | |
Bma11g00043 | 251 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 18 | 250 | IPR044848 | GO:0003700 | |
Bma11g00043 | 251 | PANTHER | MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN | 18 | 250 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01204 | Bma-Chr2:54120400 | Bma11g00043 | Bma-Chr11:576963 | 9.23E-69 | dispersed | |
Bma11g00043 | Bma-Chr11:576963 | Bma12g00569 | Bma-Chr12:24779078 | 2.12E-51 | dispersed | |
Bma11g00043 | Bma-Chr11:576963 | Bma06g01283 | Bma-Chr6:49912101 | 1.47E-70 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58000 | PF00249 | Myb_DNA-binding | 1.10E-05 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00043 | - | - | rcn:112165644 | 323.168 |