Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00064 ATGGCGGCTTCTTTTGCGAGCATAGACCCGCCTGCGAATTCCCATCCACTCTTAACTTTCACCATACCCTCCTTCTCCGAGCTCTTGAGCTATGGTTGCGATGAGGTACAACCTACCGGCAGTAATGGCCGCCTCGGATTGTCGGATTGTACCGGGGAACGAACTGGGTCGGGTGTGCCTAAGTTCAAGTCTTTTTCTCCACCGATATTGCCGTTGTCTCCGTCCCCACTTTCTCCCTCTTCTTACTTCTCTATTCTTGCTGGGCTGAGCCCGGCTGAGCTCTTAGACTCCCCTGTTCTCTTTAACTCCTCTAACCATACTCTGCCATCACCGACGACGGGAGCATTCCCGTTCCAATCGTTCAACTGGAAGAGTAATTCCGACTTCAGCCAACAGAAGATTGAGCCGGAGAGCAAAAAATTGTCTGTTTTCTCCTTTCAAACGCAGCCAAAGCCTCCCTCAGCCAGCTCTAATCCTACTGTGTGTGAAGAGATTCAGATAGAAAAATTTCTCAACTCTCGGCCTCAGCAACAGGCGTGGAACTCTCAAGAACCATCAAAGCAGAACGAATTTTCATCGGGAATGGATGCAAAACAGGGTGATTTCACATCGAAACAGATAGTTCATCGTCCAAACAATGGAGTTATTCAATCGAATCACAGCAACCACCACCAACAGGGTCAGTCAGTAAGCAGAAGCTCCGACGATGGTTACAACTGGAGAAAGTACGGCCAGAAAGAGGTGAAAGGAAGCGAAAATCCAAGAAGTTATTACAAATGCACATTCCCCAGTTGCCCCACTAAGAAGAAGGTGGAAAGGTCGTTAGGCGGCCAAATTACTGAAATTGTCTACAAGGGCAGCCATAGCCATCCAAAACCTCAGTCTACCAGAAAATCCTCATCATCATCATCTTTAGCTCCTTTTCAGTCAATCCAAGCTTCTAATCCTGCTCTCAATGGCGCCCCTGAACTTTCATCTGCCTCCCACTCCGCTGCAACGCCTGAAAATTCCTCCATAACAATGGGGGAAGATGATTTTGATCAGAGCTCGCATAGCAGTAAACGGGAACGGAATGACTTTGACGAGGATGAACCATATGCCAAAAGATGCAGTAAAATGGAGGGTGACAAAGAAGGAATGTCAGCAGGTGGATGCAGAACAGTGAGAGAGCCTAGAGTCGTGTTTCAAACCACCAGTGACAAAGATATCTTAGTCGATGGATACAGGTGGAAAAAATATGGGCAGAAAGTCGTGAAGGGAAACCCAAATCCAAGGAGCTACTACAAGTGCACTAACCCAGGATGTCCTGTAAGAAAGCACGTAGAGAGAGCCTCGAATGATTTAAAATCAGTCATTACCACCTACGAGGGGAAGCACAACCACGGTGTCCCACTGCAATTTCTGAGCGAACTCCCTCCTGCAGCTACCATATACTTGCGAGCACTTCTTCGCAAAACCTGCAGTCACCATCCGCTTTGCCATCTCGTGGAGATCGCTGATAGTCCCAGAAGGAAGCGCATCGATTATTATATCAAAATCAGTCAAAGGCTGAGCAATGGGGATCTGGTGGTCGTCACTGTTGCCCATAATTCCTCCGGTTTCTTCATCTTCATCGTCCTCCGAGTCATATGA 1632 47.79 MAASFASIDPPANSHPLLTFTIPSFSELLSYGCDEVQPTGSNGRLGLSDCTGERTGSGVPKFKSFSPPILPLSPSPLSPSSYFSILAGLSPAELLDSPVLFNSSNHTLPSPTTGAFPFQSFNWKSNSDFSQQKIEPESKKLSVFSFQTQPKPPSASSNPTVCEEIQIEKFLNSRPQQQAWNSQEPSKQNEFSSGMDAKQGDFTSKQIVHRPNNGVIQSNHSNHHQQGQSVSRSSDDGYNWRKYGQKEVKGSENPRSYYKCTFPSCPTKKKVERSLGGQITEIVYKGSHSHPKPQSTRKSSSSSSLAPFQSIQASNPALNGAPELSSASHSAATPENSSITMGEDDFDQSSHSSKRERNDFDEDEPYAKRCSKMEGDKEGMSAGGCRTVREPRVVFQTTSDKDILVDGYRWKKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASNDLKSVITTYEGKHNHGVPLQFLSELPPAATIYLRALLRKTCSHHPLCHLVEIADSPRRKRIDYYIKISQRLSNGDLVVVTVAHNSSGFFIFIVLRVI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 758234 765608 + Bma005534.1 Bma11g00064 90466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00064 543 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 464 IPR044810 GO:0003700
Bma11g00064 543 SUPERFAMILY WRKY DNA-binding domain 233 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 Pfam WRKY DNA -binding domain 235 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 Pfam WRKY DNA -binding domain 406 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 Gene3D WRKY domain 219 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 MobiDBLite consensus disorder prediction 289 346 - -
Bma11g00064 543 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 MobiDBLite consensus disorder prediction 347 376 - -
Bma11g00064 543 ProSiteProfiles WRKY domain profile. 229 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 SMART WRKY_cls 234 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 MobiDBLite consensus disorder prediction 213 238 - -
Bma11g00064 543 MobiDBLite consensus disorder prediction 173 198 - -
Bma11g00064 543 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 41 464 - -
Bma11g00064 543 MobiDBLite consensus disorder prediction 284 384 - -
Bma11g00064 543 Gene3D WRKY domain 391 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma11g00064 543 MobiDBLite consensus disorder prediction 213 240 - -
Bma11g00064 543 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00043 Bma11g00064 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00043 Bma-Chr7:1350892 Bma11g00064 Bma-Chr11:758234 2.02E-138 dispersed
Bma11g00064 Bma-Chr11:758234 Bma13g01107 Bma-Chr13:44028849 6.62E-84 dispersed
Bma11g00064 Bma-Chr11:758234 Bma10g00588 Bma-Chr10:7220605 7.97E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58003 PF03106 WRKY 3.30E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00064 K13424 - vvi:100243352 518.464