Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00084 ATGCCTTCCATTGCTGGAGTTCGCCTCTCTATGATCGAGAACGAAGCTACATTTGATGAGATTGGAGATTTCAAATCGGTGGAAGCCGCGGAGGTGCCTAGATCCACTGGCGACGTCACACCTCAGAAGCGGAAATTGAGATCGAATTCTGAGCAGGCTAGGAAGAGCCCTGTATCTTTGTTAATGAAATGGAAGTCCCCCCGTCGATCCACAGATACTACACCTGATCGTCCTTCAAACCATGCGGATGATAGCCTTCCTAATGTGCGCAAATCACCTGTAAAATGCCTGGCTAAGAGTTTCAGCACTAAACCAAACTGGAATCCCAGAGGTCAGGAGCAAAAAAAGGCAGTGAAGGAAGCATTGCATGTGTCTACAGCGCCATCTAGTGTTGTATGCCGTGAAGATGAGCAAACGAGAATATTGAACTTCTGTAAGGATTCTGTAGAGAAAAGGAAACCCGGAAGTTTATATGTTTGTGGGTGCCCAGGCACTGGAAAATCATTATCCATGGAAAAAGTGAAGCATCGTCTTGTTGATTGGGCAACAGAGGCCGGTCTTCAGCTGCCGGATATCTTGGCTGTAAACTGCACTTCTCTATCAAATACATCTGACATATTTACCAAGATACTTGGTGAAAAGAAACAAAACAAGAAAAAGATTGGTTCAATTTCACCGCTGCAATATCTTCAGAGCTTTTACTCGCAACAACCAAAATCATCTTCCATGAAAATGACGCTGCTGATTGCAGATGAGTTGGATTACTTAATTACCAAGGATAAAGCAGTACTTAATGATCTTTTCATGCTTACAATTCTGCCCTTCTCCAGGTGTATTCTGATAGGTATTGCTAATGCCATTGACCTAGCAGATCGTTTTCTTCCTCGACTTCACTCATTAAATTGTAAGCCTCTGGTTATAACATTTAGGGCCTACACTAAAGATCAGATTATCAAGATTCTTCAAGAAAGGCTTATTTCGCTTCCTTTTTCTGTCTTTCAGCCACAATCACTGGAACTTTGTGCGAGAAAAATTTCTGCTATGTCGGGTGATATGAGACAAGCACTTTGTGTCTGCAGAAGTGCCATTGAACTGATAGAAGTTGAGGTATGTAAAACCGTAAATCTATCTGCACATCAAGATTCGAGCAAGGAACATGAATTTTCAGAACCGCAAGAATCTGATATTGTGAGAGTCGATCATATGGCTGCTGCACTGTCAAAGTCTTATAAATCATCAGCGGTGGACACCATAAAATCTCTTCCTCAACATCAGCAGATTATCCTTTGCTCTCTTGTGAAGCTTTTTCGAGGAGGAAGGAAGGATTCAACGGTTTGGGAGCTGAATAAATCCTACATAGATTCTTGCAAATCGACACTGATACCACCAGTTGGAACCTTAGAACTGTCAAACATGTATAGAGGTCTCAATGATCAGGGTCTTCTCAAACTAGGCCAATCTCGAGACGAAAAATTAAAAAGAGTGACATTAACAGTTGATGAAGGGGATATCACCTTTGCATTACAGGTGTGTTATGCATTTTTTTTTTTTTGTTACTCAGAATGA 1566 41.57 MPSIAGVRLSMIENEATFDEIGDFKSVEAAEVPRSTGDVTPQKRKLRSNSEQARKSPVSLLMKWKSPRRSTDTTPDRPSNHADDSLPNVRKSPVKCLAKSFSTKPNWNPRGQEQKKAVKEALHVSTAPSSVVCREDEQTRILNFCKDSVEKRKPGSLYVCGCPGTGKSLSMEKVKHRLVDWATEAGLQLPDILAVNCTSLSNTSDIFTKILGEKKQNKKKIGSISPLQYLQSFYSQQPKSSSMKMTLLIADELDYLITKDKAVLNDLFMLTILPFSRCILIGIANAIDLADRFLPRLHSLNCKPLVITFRAYTKDQIIKILQERLISLPFSVFQPQSLELCARKISAMSGDMRQALCVCRSAIELIEVEVCKTVNLSAHQDSSKEHEFSEPQESDIVRVDHMAAALSKSYKSSAVDTIKSLPQHQQIILCSLVKLFRGGRKDSTVWELNKSYIDSCKSTLIPPVGTLELSNMYRGLNDQGLLKLGQSRDEKLKRVTLTVDEGDITFALQVCYAFFFFCYSE 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 960515 965308 - Bma005553.1 Bma11g00084 90486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00084 521 Gene3D - 112 301 IPR027417 -
Bma11g00084 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 377 IPR027417 -
Bma11g00084 521 SMART Cdc6_C_2 429 508 IPR015163 -
Bma11g00084 521 Gene3D - 302 418 - -
Bma11g00084 521 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 30 509 - -
Bma11g00084 521 Pfam CDC6, C terminal winged helix domain 429 507 IPR015163 -
Bma11g00084 521 Pfam AAA domain 153 272 IPR003593 -
Bma11g00084 521 CDD AAA 137 298 - -
Bma11g00084 521 PIRSF Cdc6 10 513 IPR016314 GO:0006270|GO:0051301
Bma11g00084 521 MobiDBLite consensus disorder prediction 23 89 - -
Bma11g00084 521 SUPERFAMILY Winged helix DNA-binding domain 415 509 IPR036390 -
Bma11g00084 521 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 30 509 - -
Bma11g00084 521 Gene3D - 419 505 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00084 K02213 CDC6; cell division control protein 6 - mnt:21404873 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00084 Bma-Chr11:960515 Bma14g00768 Bma-Chr14:8502750 1.15E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g599 . . Bda02g00849 . Bpe01g00096 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0580 Cone5ag1091 . . . Csa06g01433 . Cme11g01369 Blo13g01051 Blo14g00089 . . . . . Bma11g00084 Sed05g3754 . . . . . . . . Bhi10g00804 Tan05g0460 Cmetu11g1143 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00768 . 145 883 Core DNA Replication Machinery Family AT4G14700 65.9 6.9e-281 963.4
Bma14g00768 . 80 883 Core DNA Replication Machinery Family AT4G12620 63.2 4.5e-288 987.3
Bma05g00078 . 7 368 Core DNA Replication Machinery Family AT2G37560 64.9 1.4e-134 476.1
Bma05g00061 . 7 360 Core DNA Replication Machinery Family AT2G37560 65.8 1.8e-132 469.2
Bma11g00406 . 7 279 Core DNA Replication Machinery Family AT2G37560 54.3 4.1e-97 351.7
Bma01g00448 . 1 415 Core DNA Replication Machinery Family AT2G01120 61.1 1.2e-138 490.0
Bma01g00093 . 1 319 Core DNA Replication Machinery Family AT1G26840 59.9 1.0e-93 340.1
Bma12g00588 . 1 799 Core DNA Replication Machinery Family AT1G79150 55.6 8.0e-232 800.4
Bma07g01373 . 1 940 Core DNA Replication Machinery Family AT1G44900 76.2 0.0e+00 1368.6
Bma03g00566 BCT 4 728 Core DNA Replication Machinery Family AT2G16440 73.9 5.4e-313 1070.1
Bma01g00291 . 936 1699 Core DNA Replication Machinery Family AT2G07690 74.1 0.0e+00 1086.6
Bma07g00859 . 1 836 Core DNA Replication Machinery Family AT5G44635 70.2 0.0e+00 1139.4
Bma15g00493 CCT 18 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1188.7
Bma11g00084 . 40 509 Core DNA Replication Machinery Family AT2G29680 57.2 5.2e-149 524.6
Bma11g00084 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.6 6.1e-136 481.1
Bma12g00066 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 8.2e-255 876.3
Bma09g00801 . 3 596 Core DNA Replication Machinery Family AT3G25100 76.8 7.7e-253 869.8
Bma15g00665 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-252 868.2
Bma04g01647 . 22 728 Core DNA Replication Machinery Family AT3G09660 60.8 6.2e-250 860.5
Bma10g01097 CCT 1 610 Core DNA Replication Machinery Family AT2G14050 76.2 1.2e-270 929.1
Bma03g01547 . 1 246 Core DNA Replication Machinery Family AT2G14050 74.9 3.2e-95 346.3
Bma03g01549 . 9 260 Core DNA Replication Machinery Family AT2G14050 56.9 7.4e-76 282.0
Bma05g00365 . 6 353 Core DNA Replication Machinery Family AT2G20980 54.6 5.2e-104 374.8
Bma15g00229 . 1 228 Core DNA Replication Machinery Family AT1G77320 71.9 2.9e-95 347.1
Bma13g00787 . 1 191 Core DNA Replication Machinery Family AT1G80190 69.1 7.5e-75 276.9
Bma14g00519 . 2 192 Core DNA Replication Machinery Family AT1G80190 69.1 1.7e-74 275.8
Bma14g00698 . 2 192 Core DNA Replication Machinery Family AT1G80190 68.0 1.1e-73 273.1
Bma08g00026 . 1 191 Core DNA Replication Machinery Family AT1G80190 67.5 3.1e-73 271.6
Bma05g00599 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma07g00894 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT1G19080 65.9 6.2e-68 253.8
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT3G55490 65.9 6.2e-68 253.8
Bma02g00932 . 15 163 Core DNA Replication Machinery Family AT5G49010 64.0 1.5e-48 189.5
Bma15g00244 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.1 2.4e-217 751.9
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma05g00872 . 1 453 Core DNA Replication Machinery Family AT5G41880 65.3 7.8e-181 630.2
Bma09g00431 . 27 1152 Core DNA Replication Machinery Family AT5G63960 74.7 0.0e+00 1696.8
Bma10g00174 . 4 437 Core DNA Replication Machinery Family AT2G42120 76.0 1.4e-198 689.1
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma11g00219 . 2 1474 Core DNA Replication Machinery Family AT1G08260 76.5 0.0e+00 2272.7
Bma11g00219 . 23 1474 Core DNA Replication Machinery Family AT2G27120 74.1 0.0e+00 2150.6
Bma12g01277 . 7 486 Core DNA Replication Machinery Family AT5G22110 70.3 1.6e-195 679.1
Bma03g00647 . 22 198 Core DNA Replication Machinery Family AT5G22110 56.8 1.2e-54 211.1
Bma07g00220 . 7 911 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-287 986.1
Bma05g00808 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 4.6e-170 594.0
Bma01g02668 BCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.4e-177 619.0
Bma01g01795 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 2.4e-177 618.2
Bma04g00016 BCT 1 336 Core DNA Replication Machinery Family AT1G21690 81.3 1.5e-152 535.8
Bma02g00213 BCT 1 339 Core DNA Replication Machinery Family AT1G77470 71.4 6.2e-144 507.3
Bma01g00807 BCT 1 283 Core DNA Replication Machinery Family AT1G77470 57.4 1.3e-93 340.1
Bma06g00893 . 1 450 Core DNA Replication Machinery Family AT2G06510 77.2 3.3e-214 741.5
Bma12g00253 . 2 454 Core DNA Replication Machinery Family AT2G06510 65.5 1.9e-185 646.0
Bma12g00964 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.1e-242 835.1
Bma08g00242 CCT 1 591 Core DNA Replication Machinery Family AT5G08020 62.5 1.0e-220 763.1
Bma12g00253 . 1 558 Core DNA Replication Machinery Family AT5G45400 62.8 2.4e-207 719.2
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT5G45400 63.0 6.8e-170 594.7
Bma12g00964 CCT 1 624 Core DNA Replication Machinery Family AT5G61000 64.8 6.2e-237 817.0
Bma08g00242 CCT 1 585 Core DNA Replication Machinery Family AT5G61000 61.7 9.4e-217 750.0
Bma12g00253 . 2 579 Core DNA Replication Machinery Family AT4G19130 60.7 7.9e-205 710.7
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT4G19130 60.3 2.3e-164 576.2
Bma01g00646 . 1 361 Core DNA Replication Machinery Family AT5G26680 83.9 7.4e-178 620.2
Bma02g01168 . 1 1131 Core DNA Replication Machinery Family AT1G08840 50.7 1.5e-288 989.2
Bma08g00918 . 1 295 Core DNA Replication Machinery Family AT2G25100 68.2 1.6e-115 412.5
Bma08g00503 . 1 239 Core DNA Replication Machinery Family AT2G25100 72.4 1.0e-98 356.7
Bma07g00168 . 46 802 Core DNA Replication Machinery Family AT1G08130 67.6 1.4e-286 982.2
Bma07g00168 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.0e-231 797.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003604 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 1 3 11 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00084 Bma_Chr11 FPKM 4.551669 4.613994 33.278275 29.659128 5.387278 5.099185 5.672917 68.812508 65.919182 65.280983