Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00103 | ATGGCGATTCACAAACCGGAGCTAGGTTCTAACCTGAACTCCAATCAACCAGCAAAGCTTCGTTGGGGTGAGCTTGAGGAGGACGATGGAGAGGACCTCGACTTTTTTTTCCCTCCTAAGCAGGTAATCGGACCCGATGAGAATGGAATTAAGAAAGTTATAGAATATAAATTGAACAATGAGGGTAACAAGGTTAAGATCACCACCATAAGTCGCATTCGTAAGCTCGCAAATGCTAGGCTCAGCAAACAAGCCGTGGAGCGTAGATCTTGGCCTAAGTTTGGAGATGCGGTTCACGAAGAAGTTGGTAGCAGGCTAACCATGGTCTCCACTGAAGAGATTGTCCTCGAGCGCCCGAGGGCTCCTGGCAGGATTCTTTATGATATATTCGAAGGTACCAAAACAGAGGAGCCAAAGGCTGCTGGTGATTCGTTAACCCAACTTAATAAAGGCGCTGTTCTCATGGTTTGTAGAACTTGTGGAAAGAAAGGTGACCATTGGACTTCAAGGTGCCCTTACAAGGATCTTGCTCCACAGGCAGAGGGGTTTGTGGATAAGCCTGTTGCATCCGAGACTACTGCAGGTGCTTCAGGCCCTAGTAAAGGAACGTATGTGCCCCCCAGCATGAGAGCAGGGGCCGAGAAAACAGGAACTGACATGAGACGCCGGAACGACGAGAACTCTGTTCGTGTTACCAACCTCTCTGAGGACACAAGAGAGCCTGACCTGCATGAGCTTTTCCGACCTTTTGGTAACATAAGCCGTGTATACGTGGCAATTGATCAGAAGACAGGAATGAGCAGAGGATTTGGTTTTGTCAACTTTGTCAACAGGGAAGAAGCTCAGAGAGCCATCAACAAACTCAATGGGTACGGCTATGACAACCTCATCCTCAGAGTGGAATGGGCCACTCCTAGAGCAAATTAG | 927 | 48.33 | MAIHKPELGSNLNSNQPAKLRWGELEEDDGEDLDFFFPPKQVIGPDENGIKKVIEYKLNNEGNKVKITTISRIRKLANARLSKQAVERRSWPKFGDAVHEEVGSRLTMVSTEEIVLERPRAPGRILYDIFEGTKTEEPKAAGDSLTQLNKGAVLMVCRTCGKKGDHWTSRCPYKDLAPQAEGFVDKPVASETTAGASGPSKGTYVPPSMRAGAEKTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGNISRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAN | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1040351 | 1042359 | + | Bma030410 | Bma11g00103 | 90505 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00103 | 308 | SMART | rrm1_1 | 228 | 301 | IPR000504 | GO:0003723 | |
Bma11g00103 | 308 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 19 | 307 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Bma11g00103 | 308 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 17 | 308 | - | - | |
Bma11g00103 | 308 | Gene3D | - | 189 | 308 | IPR012677 | - | |
Bma11g00103 | 308 | MobiDBLite | consensus disorder prediction | 190 | 218 | - | - | |
Bma11g00103 | 308 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 41 | 176 | IPR024675 | - | |
Bma11g00103 | 308 | CDD | eIF3G | 48 | 175 | IPR024675 | - | |
Bma11g00103 | 308 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 227 | 305 | IPR000504 | GO:0003723 | |
Bma11g00103 | 308 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 17 | 308 | - | - | |
Bma11g00103 | 308 | SUPERFAMILY | RNA-binding domain, RBD | 225 | 307 | IPR035979 | GO:0003676 | |
Bma11g00103 | 308 | CDD | RRM_eIF3G_like | 228 | 303 | IPR034240 | - | |
Bma11g00103 | 308 | PIRSF | Transl_init_eIF-3_RNA-bind | 12 | 308 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Bma11g00103 | 308 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 229 | 295 | IPR000504 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g01404 | Bma-Chr7:49825848 | Bma11g00103 | Bma-Chr11:1040351 | 1.27E-10 | dispersed | |
Bma11g00103 | Bma-Chr11:1040351 | Bma10g00288 | Bma-Chr10:2639970 | 6.33E-12 | dispersed | |
Bma14g00777 | Bma-Chr14:8634338 | Bma11g00103 | Bma-Chr11:1040351 | 7.08E-11 | dispersed | |
Bma11g00103 | Bma-Chr11:1040351 | Bma01g00128 | Bma-Chr1:1257874 | 3.21E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00103 | K03248 | - | jre:108998481 | 491.886 |