Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00103 ATGGCGATTCACAAACCGGAGCTAGGTTCTAACCTGAACTCCAATCAACCAGCAAAGCTTCGTTGGGGTGAGCTTGAGGAGGACGATGGAGAGGACCTCGACTTTTTTTTCCCTCCTAAGCAGGTAATCGGACCCGATGAGAATGGAATTAAGAAAGTTATAGAATATAAATTGAACAATGAGGGTAACAAGGTTAAGATCACCACCATAAGTCGCATTCGTAAGCTCGCAAATGCTAGGCTCAGCAAACAAGCCGTGGAGCGTAGATCTTGGCCTAAGTTTGGAGATGCGGTTCACGAAGAAGTTGGTAGCAGGCTAACCATGGTCTCCACTGAAGAGATTGTCCTCGAGCGCCCGAGGGCTCCTGGCAGGATTCTTTATGATATATTCGAAGGTACCAAAACAGAGGAGCCAAAGGCTGCTGGTGATTCGTTAACCCAACTTAATAAAGGCGCTGTTCTCATGGTTTGTAGAACTTGTGGAAAGAAAGGTGACCATTGGACTTCAAGGTGCCCTTACAAGGATCTTGCTCCACAGGCAGAGGGGTTTGTGGATAAGCCTGTTGCATCCGAGACTACTGCAGGTGCTTCAGGCCCTAGTAAAGGAACGTATGTGCCCCCCAGCATGAGAGCAGGGGCCGAGAAAACAGGAACTGACATGAGACGCCGGAACGACGAGAACTCTGTTCGTGTTACCAACCTCTCTGAGGACACAAGAGAGCCTGACCTGCATGAGCTTTTCCGACCTTTTGGTAACATAAGCCGTGTATACGTGGCAATTGATCAGAAGACAGGAATGAGCAGAGGATTTGGTTTTGTCAACTTTGTCAACAGGGAAGAAGCTCAGAGAGCCATCAACAAACTCAATGGGTACGGCTATGACAACCTCATCCTCAGAGTGGAATGGGCCACTCCTAGAGCAAATTAG 927 48.33 MAIHKPELGSNLNSNQPAKLRWGELEEDDGEDLDFFFPPKQVIGPDENGIKKVIEYKLNNEGNKVKITTISRIRKLANARLSKQAVERRSWPKFGDAVHEEVGSRLTMVSTEEIVLERPRAPGRILYDIFEGTKTEEPKAAGDSLTQLNKGAVLMVCRTCGKKGDHWTSRCPYKDLAPQAEGFVDKPVASETTAGASGPSKGTYVPPSMRAGAEKTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGNISRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1040351 1042359 + Bma030410 Bma11g00103 90505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00103 308 SMART rrm1_1 228 301 IPR000504 GO:0003723
Bma11g00103 308 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 19 307 IPR017334 GO:0003743|GO:0005737|GO:0005852
Bma11g00103 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 308 - -
Bma11g00103 308 Gene3D - 189 308 IPR012677 -
Bma11g00103 308 MobiDBLite consensus disorder prediction 190 218 - -
Bma11g00103 308 Pfam Eukaryotic translation initiation factor 3 subunit G 41 176 IPR024675 -
Bma11g00103 308 CDD eIF3G 48 175 IPR024675 -
Bma11g00103 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 305 IPR000504 GO:0003723
Bma11g00103 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 308 - -
Bma11g00103 308 SUPERFAMILY RNA-binding domain, RBD 225 307 IPR035979 GO:0003676
Bma11g00103 308 CDD RRM_eIF3G_like 228 303 IPR034240 -
Bma11g00103 308 PIRSF Transl_init_eIF-3_RNA-bind 12 308 IPR017334 GO:0003743|GO:0005737|GO:0005852
Bma11g00103 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01404 Bma-Chr7:49825848 Bma11g00103 Bma-Chr11:1040351 1.27E-10 dispersed
Bma11g00103 Bma-Chr11:1040351 Bma10g00288 Bma-Chr10:2639970 6.33E-12 dispersed
Bma14g00777 Bma-Chr14:8634338 Bma11g00103 Bma-Chr11:1040351 7.08E-11 dispersed
Bma11g00103 Bma-Chr11:1040351 Bma01g00128 Bma-Chr1:1257874 3.21E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00103 K03248 - jre:108998481 491.886