Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00104 ATGGGCGACATCTGCTGTGGTGTTTTTACTGACGGCGACAACTCCTCTCGCCCCGACTCCAGCTCTCGTTTGGCTAGGCGGCGGAGGATGGTGATCAGAAAGATTAAGCTCGGGGTTGATGTACCGCCATCGGAGGCGGAGAGAGAGCGTAAACGTCCGAAGCTTGAAATTTGTGCCGGATCGTCGTCTAGGGACTGCCATCGCCAAGCGGAGAGTTTTGTTTTCGAAGGTGGAAAGCGGAACAAGTTGGTAGGGACTAGACAAATGGGGACTAAGGAGATCTCATGTTCTGGTGAGTCATCCGCCGTTCAAGTGACGATGACGCTTCAATCTTGCTCTGAACTTCTTAACCCGAAAAATCCCGATGACTCTCCAAAGTTCGGGACTGCTTCGGTGTGTGGAAGGCGGAGAGAAATGGAGGACGCTGTGGCTATTCACCCTTCCTTTTTCCGACGAGACCTCGAAAAGATATCTTCTTCGTTTCACTATTTTGGTGTGTATGACGGCTATGGATGCTCACACGTTTCTACCAGGTGCCGAGAACGACTCCATGAGCTGGTGAAAGAAAAGCTGGAGAAAACGGAACCACCGGTAAAGGAGTGGAAAAATATCATGGAGAGGAGCTTCCGGCGAATGGATAAGGAGGTAGTGGTGTCAAATAATAGTAGTAGTGCAGCTACCAAATGCAGATGCGCGCTTCAGTCGCCGCAGTGCGATGCGGTCGGATCTACGGCTGTTGTTTCGATTATTGCTTCCGATAAGATCATTGTGGCGAACTGCGGCGACTCGAGAGCAGTGCTTTGTCGTAACGGACAACCCATACCTCTATCTTCCGATCACAAACCGGATCGTCCAGACGAACTGAGTCGAATCCGTGCCGCGGGTGGACGAGTAATCTATTGGGACGGTCCTCGAGTTCTCGGAGTTCTAGCCATCTCCAGGGCTATAGGTAAACTGGTGGATCATCATTCGAAAGCTCTCGATTTTTACGCTACTGCAGGCGATAACCACCTCAAGCCATACGTGATCTGCAAGCCAGAAGTAACGTCGACCGAACGGAAGGAGGACGACGAGTGTCTTATTCTAGGCAGCGACGGGCTGTGGGACGTGGTGTCGAACGAGACGGCGTGCAGGATGGTGCTCGTGTGCTTGCAAGAGAAGAAGGACGAGGACGCCGCGAGGGGGAGTGAAAAGAGCGACGGCGGGGGAGAGACGGCGGACGAGGCATGTACGGAAGCATCCATGGTGCTTACGAAGCTGGCTTTGGCGAGGGGAAGCTCGGACAATGTCAGCGTGGTGGTGGTGGATCTGAGGAGGGGCACGCGGGATAAGAAGTACCTTTCTTGTCGCTGA 1353 53.29 MGDICCGVFTDGDNSSRPDSSSRLARRRRMVIRKIKLGVDVPPSEAERERKRPKLEICAGSSSRDCHRQAESFVFEGGKRNKLVGTRQMGTKEISCSGESSAVQVTMTLQSCSELLNPKNPDDSPKFGTASVCGRRREMEDAVAIHPSFFRRDLEKISSSFHYFGVYDGYGCSHVSTRCRERLHELVKEKLEKTEPPVKEWKNIMERSFRRMDKEVVVSNNSSSAATKCRCALQSPQCDAVGSTAVVSIIASDKIIVANCGDSRAVLCRNGQPIPLSSDHKPDRPDELSRIRAAGGRVIYWDGPRVLGVLAISRAIGKLVDHHSKALDFYATAGDNHLKPYVICKPEVTSTERKEDDECLILGSDGLWDVVSNETACRMVLVCLQEKKDEDAARGSEKSDGGGETADEACTEASMVLTKLALARGSSDNVSVVVVDLRRGTRDKKYLSCR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1042831 1044548 - Bma005572.1 Bma11g00104 90506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00104 450 SMART PP2C_4 114 435 IPR001932 -
Bma11g00104 450 ProSiteProfiles PPM-type phosphatase domain profile. 126 437 IPR001932 -
Bma11g00104 450 CDD PP2Cc 126 425 IPR001932 -
Bma11g00104 450 PANTHER PROTEIN PHOSPHATASE 2C 37 74 441 - -
Bma11g00104 450 PANTHER ALPHABET, ISOFORM E-RELATED 74 441 - -
Bma11g00104 450 Pfam Protein phosphatase 2C 128 430 IPR001932 -
Bma11g00104 450 Gene3D - 118 445 IPR036457 -
Bma11g00104 450 SUPERFAMILY PP2C-like 126 438 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma11g00104 Bma14g00520 CCT
Bma11g00104 Bma14g00520 ECH
Bma07g00086 Bma11g00104 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01171 Bma-Chr10:41120187 Bma11g00104 Bma-Chr11:1042831 1.10E-76 dispersed
Bma11g00104 Bma-Chr11:1042831 Bma01g00916 Bma-Chr1:8903840 1.51E-74 dispersed
Bma11g00104 Bma-Chr11:1042831 Bma14g00520 Bma-Chr14:5779888 6.25E-134 wgd
Bma11g00104 Bma-Chr11:1042831 Bma03g00142 Bma-Chr3:1069355 1.45E-129 wgd
Bma11g00104 Bma-Chr11:1042831 Bma07g00086 Bma-Chr7:1652327 0 wgd
Bma11g00104 Bma-Chr11:1042831 Bma07g01553 Bma-Chr7:51002858 7.66E-36 wgd
Bma11g00104 Bma-Chr11:1042831 Bma08g01106 Bma-Chr8:50040361 3.41E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00104 K14497 - tcc:18590620 476.863