Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00114 ATGGCGGTCTTTGTAGCATACCTAGCATGCCTTGTATCATTAATGTGGGTAGTTGAAGGACGAATTCCTGGCGTTTACAACGGTGGAGCATGGGAGAGCGCTCATGCTACATTCTATGGCGGTTCTGATGCTTCTGGTACAATGGGAGGAGCTTGTGGGTACGGCAATCTGTACAGCCAGGGGTACGGAGTCAACACGGCGGCGCTTAGCACAGCGCTGTTCAACAGTGGCCTGAGTTGCGGCGCATGCTTCGAGATAAAGTGCGCAAACGATCGACAGTGGTGTCATTCCGGAAGCCCATCCATCTTCATTACCGCTACTAACTTTTGTCCACCCAACTACGCTCTTCCAAACGACAATGGCGGTTGGTGCAACCCCCCTCGCCCCCACTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAATACCGCGCCGGAATCGTTCCCGTCGCTTACCGACGAGTCCCATGCCGGAAACAGGGAGGGATGAGATTTACGATAAACGGATTCCGGTACTTCAACTTGCTTCTGATCTCGAACGTCGCGGGTGCAGGGGATTTAGTGAGGGTGAGCGTGAAAGGGACGAAGACTGGTTGGATGAGCATGAGCAGAAACTGGGGTCAAAACTGGCAGTCAAACGCACTTCTGGTAGGGCAGTCATTGTCATTCAGGGTGACAGGCAGTGACAGAAGAACCTCCACCTCCTGGAACGTCGTCCCATCCCATTGGCAGTTCGGTCAAACTTTCACCGGCAAGAACTTCAGAGTCTGA 774 53.62 MAVFVAYLACLVSLMWVVEGRIPGVYNGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGMRFTINGFRYFNLLLISNVAGAGDLVRVSVKGTKTGWMSMSRNWGQNWQSNALLVGQSLSFRVTGSDRRTSTSWNVVPSHWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1110498 1111489 + Bma005581.1 Bma11g00114 90516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00114 257 Gene3D - 164 255 IPR036749 -
Bma11g00114 257 PANTHER EXPANSIN-A15 5 256 IPR002963 GO:0009664
Bma11g00114 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Bma11g00114 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Bma11g00114 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Bma11g00114 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Bma11g00114 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Bma11g00114 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Bma11g00114 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Bma11g00114 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Bma11g00114 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Bma11g00114 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Bma11g00114 257 PANTHER EXPANSIN 5 256 - -
Bma11g00114 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Bma11g00114 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Bma11g00114 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Bma11g00114 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Bma11g00114 257 SMART dpbb_1 66 153 IPR007112 -
Bma11g00114 257 Gene3D - 19 159 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00098 Bma11g00114 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00298 Bma-Chr10:2731295 Bma11g00114 Bma-Chr11:1110498 7.89E-44 dispersed
Bma11g00114 Bma-Chr11:1110498 Bma06g00699 Bma-Chr6:37211612 2.30E-126 dispersed
Bma01g01865 Bma-Chr1:68418003 Bma11g00114 Bma-Chr11:1110498 7.44E-164 wgd
Bma11g00114 Bma-Chr11:1110498 Bma04g00671 Bma-Chr4:6450942 1.22E-163 wgd
Bma11g00114 Bma-Chr11:1110498 Bma07g00098 Bma-Chr7:1745475 0 wgd
Bma11g00114 Bma-Chr11:1110498 Bma08g01113 Bma-Chr8:50094989 1.08E-153 wgd
Bma11g00114 Bma-Chr11:1110498 Bma08g01001 Bma-Chr8:49073113 1.23E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00114 - - qsu:112016081 501.13