Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00120 ATGGCAGACGCGGAGGATATTCAGCCACTTGTGTGTGACAATGGAACAGGAATGGTTAAGGCTGGTTTTGCTGGAGATGACGCTCCGAGGGCAGTATTCCCTAGTATCGTGGGTCGTCCACGACACACAGGGGTGATGGTTGGTATGGGCCAGAAAGATGCATATGTTGGTGATGAAGCTCAATCCAAACGGGGTATATTAACATTGAAGTACCCGATTGAGCATGGAATTGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACCTTTTACAACGAGCTCAGAGTGGCTCCTGAAGAACATCCAGTTCTGCTCACTGAAGCACCTCTTAACCCAAAGGCCAATCGTGAAAAAATGACCCAAATCATGTTTGAGACTTTCAACACTCCGGCAATGTATGTGGCTATCCAAGCGGTTCTCTCCCTCTATGCCAGTGGACGAACAACCGGTATTGTTTTGGACTCCGGTGATGGTGTCAGCCATACCGTCCCTATTTACGAGGGATACGCCCTTCCCCATGCCATTCTTCGTCTTGACCTAGCAGGGCGCGACCTCACGGATGCCCTGATGAAAATACTGACTGAACGTGGCTATTCCTTTACCACCACAGCCGAGCGTGAAATTGTTAGGGACGTGAAGGAGAAGCTTGCATATATTGCTCTTGATTATGAGCAAGAACTTGAAACTGCCAAGACTAGTTCTGCTGTCGAGAAGAGCTACGAGTTACCCGATGGGCAGGTCATCACAATCGGCGCTGAGCGTTTCCGGTGTCCGGAGGTTCTTTTCCAGCCTTCCATGATCGGGATGGAGGCTGCTGGCATTCATGAAACGACGTACAATTCCATCATGAAATGCGACGTTGACATTAGGAAGGATTTGTATGGAAACATTGTCCTTAGTGGTGGCTCCACAATGTTCCCCGGTATTGCTGATAGAATGAGCAAGGAGATAACTGCTTTAGCCCCTAGCAGTATGAAAATCAAGGTCGTGGCTCCGCCGGAAAGAAAGTACAGTGTCTGGATTGGTGGTTCCATATTGGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCAGAGTACGACGAATCAGGCCCATCAATTGTGCATAGAAAATGCTTCTGA 1134 48.59 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1143658 1145104 - Bma005586.1 Bma11g00120 90522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00120 377 Gene3D - 10 371 - -
Bma11g00120 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bma11g00120 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bma11g00120 377 Pfam Actin 5 377 IPR004000 -
Bma11g00120 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bma11g00120 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bma11g00120 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bma11g00120 377 SMART actin_3 7 377 IPR004000 -
Bma11g00120 377 PANTHER ACTIN 3 1 376 - -
Bma11g00120 377 Gene3D - 140 340 - -
Bma11g00120 377 PANTHER ACTIN 1 376 IPR004000 -
Bma11g00120 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bma11g00120 377 PRINTS Actin signature 28 37 IPR004000 -
Bma11g00120 377 PRINTS Actin signature 51 62 IPR004000 -
Bma11g00120 377 PRINTS Actin signature 63 85 IPR004000 -
Bma11g00120 377 PRINTS Actin signature 117 130 IPR004000 -
Bma11g00120 377 PRINTS Actin signature 142 161 IPR004000 -
Bma11g00120 377 PRINTS Actin signature 238 254 IPR004000 -
Bma11g00120 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00120 K10355 ACTF; actin, other eukaryote - mnt:21407928 755.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01494 Bma-Chr4:50945111 Bma11g00120 Bma-Chr11:1143658 0 dispersed
Bma04g01498 Bma-Chr4:51007317 Bma11g00120 Bma-Chr11:1143658 0 dispersed
Bma10g00648 Bma-Chr10:9319360 Bma11g00120 Bma-Chr11:1143658 1.00E-12 dispersed
Bma03g01025 Bma-Chr3:11390098 Bma11g00120 Bma-Chr11:1143658 0 transposed
Bma09g00406 Bma-Chr9:34211262 Bma11g00120 Bma-Chr11:1143658 0 transposed
Bma10g01116 Bma-Chr10:35416835 Bma11g00120 Bma-Chr11:1143658 3.22E-144 transposed
Bma11g00832 Bma-Chr11:26361226 Bma11g00120 Bma-Chr11:1143658 2.77E-39 transposed
Bma12g00933 Bma-Chr12:41011392 Bma11g00120 Bma-Chr11:1143658 3.45E-93 transposed
Bma13g00594 Bma-Chr13:13651268 Bma11g00120 Bma-Chr11:1143658 3.75E-119 transposed
Bma10g01130 Bma-Chr10:37302351 Bma11g00120 Bma-Chr11:1143658 8.20E-39 transposed
Bma11g00120 Bma-Chr11:1143658 Bma03g00129 Bma-Chr3:989516 0 wgd
Bma11g00120 Bma-Chr11:1143658 Bma08g01117 Bma-Chr8:50119908 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g432 . . . Bda09g01504 Bpe01g00134 . . . . . . . . . . Cpe05g00918 . . . . . . . . Cla02g01971 Cam02g2090 Cec02g2127 Cco02g2157 Clacu02g2076 Cmu02g2013 Cre02g2324 Cone1ag0645 . . . . . . . Blo13g01078 Blo14g00119 . . Bpe08g00106 . . Bma11g00120 Sed08g0343 Cmo02g00807 Cmo20g00447 Cma02g00806 Cma20g00406 Car02g00582 Car20g00354 . . Bhi10g00696 Tan05g0383 Cmetu02g1792 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.0e-215 743.8
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.6e-214 739.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.7e-213 738.4
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.2e-213 738.0
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT2G37620 96.2 2.2e-189 658.3
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT2G37620 96.2 7.7e-174 606.7
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT2G37620 95.5 1.4e-172 602.4
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT2G37620 89.4 1.2e-105 380.2
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.3e-213 738.8
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 8.4e-213 736.1
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.1e-211 731.5
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.3e-210 728.0
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT5G59370 96.2 9.3e-188 652.9
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT5G59370 96.2 3.2e-172 601.3
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT5G59370 95.5 5.5e-172 600.5
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT5G59370 89.4 2.9e-104 375.6
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 3.8e-213 737.3
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.8e-213 737.3
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 9.3e-212 732.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.0e-210 729.2
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G46520 96.4 4.2e-188 654.1
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G46520 96.5 1.4e-172 602.4
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G46520 95.8 2.5e-172 601.7
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G46520 89.8 1.3e-104 376.7
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.4e-215 745.3
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.3e-215 743.4
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.9e-213 737.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 6.4e-213 736.5
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G12110 96.7 7.6e-190 659.8
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G12110 96.8 2.6e-174 608.2
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G12110 96.8 3.4e-174 607.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G12110 89.4 9.0e-106 380.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 5.6e-209 723.4
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.4e-209 723.0
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.1e-208 721.5
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.2e-208 719.9
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G18780 92.9 5.7e-185 643.7
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G18780 93.3 2.3e-170 595.1
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G18780 92.9 1.1e-169 592.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G18780 86.1 7.1e-103 370.9
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.9e-209 724.9
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.5e-209 724.5
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 7.4e-209 723.0
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT1G49240 92.9 5.7e-185 643.7
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT1G49240 93.3 2.3e-170 595.1
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT1G49240 92.9 1.1e-169 592.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT1G49240 86.1 7.1e-103 370.9
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.5e-217 751.1
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 5.6e-217 750.0
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 3.4e-214 740.7
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.8e-213 737.3
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT5G09810 96.4 2.9e-189 657.9
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT5G09810 96.5 1.0e-173 606.3
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT5G09810 96.2 3.8e-173 604.4
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT5G09810 89.4 3.4e-105 378.6
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 78.6 9.2e-58 219.5
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 3.5e-57 217.6
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.6e-54 208.8
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.6e-54 208.8
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.9e-56 214.2
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.9e-56 214.2
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 77.9 3.9e-56 214.2
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 6.6e-56 213.4
Bma01g00212 BCT,CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.0e-37 151.8
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29340 79.9 4.1e-61 230.7
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT4G29340 79.9 4.1e-61 230.7
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 74.6 3.6e-57 217.6
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 74.6 6.8e-56 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00120 Bma_Chr11 FPKM 0.0 0.0 5.733196 4.53495 0.0 0.0 0.679358 0.0 0.0 0.0