Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00122 | ATGGAGGGAGATAAAGGCGCCCTCTTGCAGAGTCTTATCAATTTAATCAACGAAATAGCTTCTTTCTCCGATTACGCGTATTCCGTGAAGAAACAGTTTTGCAATTTAGTGAGGAGATCGAAGCTCTTGATTCCGATGTTGGAGGAGATTAGAGACGGAAAAGAGACGCCCCCTGAAGAGACGGTGAAAGCTCTTCTCGCGTTGAAGGAAGCTATGGAGTCAGCTAAGGAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTATCTGGTTATGGAGAGAGATGAAATTATGAACAAGTTCACGGAAGTGACCGGACGGTTGGAGCGAGCTTTGAGTGAAACTTGCTATGAGAAACTCGACATTTCGGATGAAATTAAGGAACAGGTCGAGCTTGTTCTTGGTCAGTTTAGACGAGCAGTAGCTCGAGTTGATCTACCCGATATTGAGCTTTATCACGATATACTACACCTTTACAATAAAAACAGTGATTCGACTACAGATCGAGATATCGTTAGACGGGTAGCCGAAAAACTGCAATTATTGGGAATAGCTGATCTTACTCGAGAGTCGTTAGCTCTGCACGAGCTGGTGGCTAGCAGTGGAGATCCAGGGGAGAAAATTGAAAAGATGTCAAATCTACTGAAGAAAATAAAGGATTTTGTTCAAACCGAAAATCTCGATACTTTCCTGAATGAGAGGATTCTAGGCCCTAGTTGTAGTGGACAAGTATCTCCCATCAAAGATCAAAACATTCCTGTTGTTCCAGATGACTTTCGCTGTCCTATATCCCTCGAGTTGATGAAGGATCCTGTCATTGTGTCTACCGGTCAGACCTATGATCGTTCCTGCATCGAGAAGTGGTTGGATGCAGGGCATGGGACGTGCCCAAAGACACAACAGGTCCTTACGAGAACCACTCTTACACCAAATTATGTGTTGCGAAGTCTCATCGAGCAATGGTGCGAATTGCATGGCATTGACCCGCCAAAACGGCCGACCAAAACTGCTTCGTCTCTTCCTGAGCGCAGTAACATTGAAATTCTCATCTCCAAACTTACGATCGGAAACCTTGACGAACAGAGATCGGCGGCTTGTGAGATCCGACTTCTTGCCAAGCGCAATGCCGATAATCGTGTGGCCATTGCTGAAGCAGGTGCAATTCCTCCTCTGGTCAACCTCCTTTCAGATTCTGATTCCCGCACTCAGGAACATGCTGTGACGGCCCTACTTAACTTGTCGATATGCGAAGATAACAAGAGACGAATCATGGCTTGTTCGGCGATTCCGGGTATCGTTCATGTTTTGAAGAAAGGAAGTATGGAGGCTCGAGAAAATGCGGCAGCCACTCTTTTCAGCCTTTCAGTTCGAGATCAAAACAAGATAATAATTGGTTCGTTAGGAGCAATCCCTCCACTTGCCACACTTTTGAACCAAGGTACACAGAGGGGAAAGAAAGATGCAGCCACAGCACTTTTCAATCTGTGCATTTACCAAGGGAACAAGGGTAAGGCAGTAAGAGCCGGAGTTGTTCCGACTCTTATGCGGCTTCTGACGGAACCCGGAGGAGGAATGTTGGATGAGGCTCTGGCTGTTTTAGCAATACTAGCCAGTCATCCTGAAGGGAAAGCTGCCATCGGAGCTGCGAGGGCAGTGCCGGTTTTGGTACAGTTTATCGGAAATGGATCCTCGAGGAACAGAGAGAATGCCGCAGCTGTTTTAGTGCATCTTATCGCCGGAGATCACTGCCATTTGGTGGAAGCTAAAGAGCTTGGAGTCATGGAGTCGCTAATAGATATGGCACAAAATGGAACTGATAGAGGCAAGCGAAAAGCTGCCCAATTGCTCGAGCGTATGACTCGATTTGTGGAGGATCAGACACAAGCTGAGGCTCAGGGAGAGACTCAATCTCATGCCCAATCGCCCTCTCCTCCGCTCACTGCCGATAGTTGA | 1953 | 47.0 | MEGDKGALLQSLINLINEIASFSDYAYSVKKQFCNLVRRSKLLIPMLEEIRDGKETPPEETVKALLALKEAMESAKELLRFGSEGSKIYLVMERDEIMNKFTEVTGRLERALSETCYEKLDISDEIKEQVELVLGQFRRAVARVDLPDIELYHDILHLYNKNSDSTTDRDIVRRVAEKLQLLGIADLTRESLALHELVASSGDPGEKIEKMSNLLKKIKDFVQTENLDTFLNERILGPSCSGQVSPIKDQNIPVVPDDFRCPISLELMKDPVIVSTGQTYDRSCIEKWLDAGHGTCPKTQQVLTRTTLTPNYVLRSLIEQWCELHGIDPPKRPTKTASSLPERSNIEILISKLTIGNLDEQRSAACEIRLLAKRNADNRVAIAEAGAIPPLVNLLSDSDSRTQEHAVTALLNLSICEDNKRRIMACSAIPGIVHVLKKGSMEARENAAATLFSLSVRDQNKIIIGSLGAIPPLATLLNQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMLDEALAVLAILASHPEGKAAIGAARAVPVLVQFIGNGSSRNRENAAAVLVHLIAGDHCHLVEAKELGVMESLIDMAQNGTDRGKRKAAQLLERMTRFVEDQTQAEAQGETQSHAQSPSPPLTADS | 650 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1154400 | 1157039 | + | Bma005588.1 | Bma11g00122 | 90524 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00122 | 650 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 328 | IPR013083 | - | |
Bma11g00122 | 650 | Gene3D | - | 7 | 116 | IPR036537 | GO:0007166 | |
Bma11g00122 | 650 | Gene3D | - | 524 | 640 | IPR011989 | - | |
Bma11g00122 | 650 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 7 | 634 | - | - | |
Bma11g00122 | 650 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 509 | 546 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SUPERFAMILY | RING/U-box | 254 | 329 | - | - | |
Bma11g00122 | 650 | Pfam | U-box domain | 255 | 325 | IPR003613 | GO:0004842|GO:0016567 | |
Bma11g00122 | 650 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 386 | 428 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | Pfam | Armadillo/beta-catenin-like repeat | 375 | 414 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | Pfam | Armadillo/beta-catenin-like repeat | 458 | 496 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SUPERFAMILY | ARM repeat | 340 | 625 | IPR016024 | - | |
Bma11g00122 | 650 | ProSiteProfiles | U-box domain profile. | 254 | 328 | IPR003613 | GO:0004842|GO:0016567 | |
Bma11g00122 | 650 | SMART | arm_5 | 457 | 497 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SMART | arm_5 | 375 | 415 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SMART | arm_5 | 416 | 456 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SMART | arm_5 | 580 | 621 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SMART | arm_5 | 498 | 538 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SMART | arm_5 | 539 | 579 | IPR000225 | GO:0005515 | |
Bma11g00122 | 650 | SMART | Ubox_2 | 258 | 321 | IPR003613 | GO:0004842|GO:0016567 | |
Bma11g00122 | 650 | CDD | RING-Ubox_PUB | 259 | 301 | IPR045210 | - | |
Bma11g00122 | 650 | MobiDBLite | consensus disorder prediction | 623 | 650 | - | - | |
Bma11g00122 | 650 | PANTHER | U BOX DOMAIN-CONTAINING | 7 | 634 | - | - | |
Bma11g00122 | 650 | MobiDBLite | consensus disorder prediction | 625 | 650 | - | - | |
Bma11g00122 | 650 | Gene3D | - | 340 | 523 | IPR011989 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma11g00122 | Bma14g00501 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00336 | Bma-Chr7:4319911 | Bma11g00122 | Bma-Chr11:1154400 | 1.42E-55 | dispersed | |
Bma11g00122 | Bma-Chr11:1154400 | Bma15g00525 | Bma-Chr15:6058597 | 8.44E-76 | dispersed | |
Bma11g00359 | Bma-Chr11:3882473 | Bma11g00122 | Bma-Chr11:1154400 | 1.15E-56 | dispersed | |
Bma15g01020 | Bma-Chr15:40626063 | Bma11g00122 | Bma-Chr11:1154400 | 1.35E-06 | dispersed | |
Bma15g01027 | Bma-Chr15:40760523 | Bma11g00122 | Bma-Chr11:1154400 | 8.25E-07 | dispersed | |
Bma01g01714 | Bma-Chr1:53690536 | Bma11g00122 | Bma-Chr11:1154400 | 6.68E-90 | transposed | |
Bma03g01129 | Bma-Chr3:14907575 | Bma11g00122 | Bma-Chr11:1154400 | 3.98E-06 | transposed | |
Bma04g00088 | Bma-Chr4:720962 | Bma11g00122 | Bma-Chr11:1154400 | 4.46E-24 | transposed | |
Bma06g00208 | Bma-Chr6:2493204 | Bma11g00122 | Bma-Chr11:1154400 | 8.00E-38 | transposed | |
Bma09g00003 | Bma-Chr9:236508 | Bma11g00122 | Bma-Chr11:1154400 | 1.57E-29 | transposed | |
Bma14g00979 | Bma-Chr14:11398426 | Bma11g00122 | Bma-Chr11:1154400 | 2.25E-06 | transposed | |
Bma14g01592 | Bma-Chr14:32906392 | Bma11g00122 | Bma-Chr11:1154400 | 6.10E-14 | transposed | |
Bma15g00190 | Bma-Chr15:1948368 | Bma11g00122 | Bma-Chr11:1154400 | 1.69E-67 | transposed | |
Bma11g00122 | Bma-Chr11:1154400 | Bma14g00501 | Bma-Chr14:5627796 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00122 | - | - | pvy:116146246 | 926.776 |