Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00122 ATGGAGGGAGATAAAGGCGCCCTCTTGCAGAGTCTTATCAATTTAATCAACGAAATAGCTTCTTTCTCCGATTACGCGTATTCCGTGAAGAAACAGTTTTGCAATTTAGTGAGGAGATCGAAGCTCTTGATTCCGATGTTGGAGGAGATTAGAGACGGAAAAGAGACGCCCCCTGAAGAGACGGTGAAAGCTCTTCTCGCGTTGAAGGAAGCTATGGAGTCAGCTAAGGAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTATCTGGTTATGGAGAGAGATGAAATTATGAACAAGTTCACGGAAGTGACCGGACGGTTGGAGCGAGCTTTGAGTGAAACTTGCTATGAGAAACTCGACATTTCGGATGAAATTAAGGAACAGGTCGAGCTTGTTCTTGGTCAGTTTAGACGAGCAGTAGCTCGAGTTGATCTACCCGATATTGAGCTTTATCACGATATACTACACCTTTACAATAAAAACAGTGATTCGACTACAGATCGAGATATCGTTAGACGGGTAGCCGAAAAACTGCAATTATTGGGAATAGCTGATCTTACTCGAGAGTCGTTAGCTCTGCACGAGCTGGTGGCTAGCAGTGGAGATCCAGGGGAGAAAATTGAAAAGATGTCAAATCTACTGAAGAAAATAAAGGATTTTGTTCAAACCGAAAATCTCGATACTTTCCTGAATGAGAGGATTCTAGGCCCTAGTTGTAGTGGACAAGTATCTCCCATCAAAGATCAAAACATTCCTGTTGTTCCAGATGACTTTCGCTGTCCTATATCCCTCGAGTTGATGAAGGATCCTGTCATTGTGTCTACCGGTCAGACCTATGATCGTTCCTGCATCGAGAAGTGGTTGGATGCAGGGCATGGGACGTGCCCAAAGACACAACAGGTCCTTACGAGAACCACTCTTACACCAAATTATGTGTTGCGAAGTCTCATCGAGCAATGGTGCGAATTGCATGGCATTGACCCGCCAAAACGGCCGACCAAAACTGCTTCGTCTCTTCCTGAGCGCAGTAACATTGAAATTCTCATCTCCAAACTTACGATCGGAAACCTTGACGAACAGAGATCGGCGGCTTGTGAGATCCGACTTCTTGCCAAGCGCAATGCCGATAATCGTGTGGCCATTGCTGAAGCAGGTGCAATTCCTCCTCTGGTCAACCTCCTTTCAGATTCTGATTCCCGCACTCAGGAACATGCTGTGACGGCCCTACTTAACTTGTCGATATGCGAAGATAACAAGAGACGAATCATGGCTTGTTCGGCGATTCCGGGTATCGTTCATGTTTTGAAGAAAGGAAGTATGGAGGCTCGAGAAAATGCGGCAGCCACTCTTTTCAGCCTTTCAGTTCGAGATCAAAACAAGATAATAATTGGTTCGTTAGGAGCAATCCCTCCACTTGCCACACTTTTGAACCAAGGTACACAGAGGGGAAAGAAAGATGCAGCCACAGCACTTTTCAATCTGTGCATTTACCAAGGGAACAAGGGTAAGGCAGTAAGAGCCGGAGTTGTTCCGACTCTTATGCGGCTTCTGACGGAACCCGGAGGAGGAATGTTGGATGAGGCTCTGGCTGTTTTAGCAATACTAGCCAGTCATCCTGAAGGGAAAGCTGCCATCGGAGCTGCGAGGGCAGTGCCGGTTTTGGTACAGTTTATCGGAAATGGATCCTCGAGGAACAGAGAGAATGCCGCAGCTGTTTTAGTGCATCTTATCGCCGGAGATCACTGCCATTTGGTGGAAGCTAAAGAGCTTGGAGTCATGGAGTCGCTAATAGATATGGCACAAAATGGAACTGATAGAGGCAAGCGAAAAGCTGCCCAATTGCTCGAGCGTATGACTCGATTTGTGGAGGATCAGACACAAGCTGAGGCTCAGGGAGAGACTCAATCTCATGCCCAATCGCCCTCTCCTCCGCTCACTGCCGATAGTTGA 1953 47.0 MEGDKGALLQSLINLINEIASFSDYAYSVKKQFCNLVRRSKLLIPMLEEIRDGKETPPEETVKALLALKEAMESAKELLRFGSEGSKIYLVMERDEIMNKFTEVTGRLERALSETCYEKLDISDEIKEQVELVLGQFRRAVARVDLPDIELYHDILHLYNKNSDSTTDRDIVRRVAEKLQLLGIADLTRESLALHELVASSGDPGEKIEKMSNLLKKIKDFVQTENLDTFLNERILGPSCSGQVSPIKDQNIPVVPDDFRCPISLELMKDPVIVSTGQTYDRSCIEKWLDAGHGTCPKTQQVLTRTTLTPNYVLRSLIEQWCELHGIDPPKRPTKTASSLPERSNIEILISKLTIGNLDEQRSAACEIRLLAKRNADNRVAIAEAGAIPPLVNLLSDSDSRTQEHAVTALLNLSICEDNKRRIMACSAIPGIVHVLKKGSMEARENAAATLFSLSVRDQNKIIIGSLGAIPPLATLLNQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMLDEALAVLAILASHPEGKAAIGAARAVPVLVQFIGNGSSRNRENAAAVLVHLIAGDHCHLVEAKELGVMESLIDMAQNGTDRGKRKAAQLLERMTRFVEDQTQAEAQGETQSHAQSPSPPLTADS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1154400 1157039 + Bma005588.1 Bma11g00122 90524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00122 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 328 IPR013083 -
Bma11g00122 650 Gene3D - 7 116 IPR036537 GO:0007166
Bma11g00122 650 Gene3D - 524 640 IPR011989 -
Bma11g00122 650 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 634 - -
Bma11g00122 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 546 IPR000225 GO:0005515
Bma11g00122 650 SUPERFAMILY RING/U-box 254 329 - -
Bma11g00122 650 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Bma11g00122 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Bma11g00122 650 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Bma11g00122 650 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Bma11g00122 650 SUPERFAMILY ARM repeat 340 625 IPR016024 -
Bma11g00122 650 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Bma11g00122 650 SMART arm_5 457 497 IPR000225 GO:0005515
Bma11g00122 650 SMART arm_5 375 415 IPR000225 GO:0005515
Bma11g00122 650 SMART arm_5 416 456 IPR000225 GO:0005515
Bma11g00122 650 SMART arm_5 580 621 IPR000225 GO:0005515
Bma11g00122 650 SMART arm_5 498 538 IPR000225 GO:0005515
Bma11g00122 650 SMART arm_5 539 579 IPR000225 GO:0005515
Bma11g00122 650 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Bma11g00122 650 CDD RING-Ubox_PUB 259 301 IPR045210 -
Bma11g00122 650 MobiDBLite consensus disorder prediction 623 650 - -
Bma11g00122 650 PANTHER U BOX DOMAIN-CONTAINING 7 634 - -
Bma11g00122 650 MobiDBLite consensus disorder prediction 625 650 - -
Bma11g00122 650 Gene3D - 340 523 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma11g00122 Bma14g00501 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00336 Bma-Chr7:4319911 Bma11g00122 Bma-Chr11:1154400 1.42E-55 dispersed
Bma11g00122 Bma-Chr11:1154400 Bma15g00525 Bma-Chr15:6058597 8.44E-76 dispersed
Bma11g00359 Bma-Chr11:3882473 Bma11g00122 Bma-Chr11:1154400 1.15E-56 dispersed
Bma15g01020 Bma-Chr15:40626063 Bma11g00122 Bma-Chr11:1154400 1.35E-06 dispersed
Bma15g01027 Bma-Chr15:40760523 Bma11g00122 Bma-Chr11:1154400 8.25E-07 dispersed
Bma01g01714 Bma-Chr1:53690536 Bma11g00122 Bma-Chr11:1154400 6.68E-90 transposed
Bma03g01129 Bma-Chr3:14907575 Bma11g00122 Bma-Chr11:1154400 3.98E-06 transposed
Bma04g00088 Bma-Chr4:720962 Bma11g00122 Bma-Chr11:1154400 4.46E-24 transposed
Bma06g00208 Bma-Chr6:2493204 Bma11g00122 Bma-Chr11:1154400 8.00E-38 transposed
Bma09g00003 Bma-Chr9:236508 Bma11g00122 Bma-Chr11:1154400 1.57E-29 transposed
Bma14g00979 Bma-Chr14:11398426 Bma11g00122 Bma-Chr11:1154400 2.25E-06 transposed
Bma14g01592 Bma-Chr14:32906392 Bma11g00122 Bma-Chr11:1154400 6.10E-14 transposed
Bma15g00190 Bma-Chr15:1948368 Bma11g00122 Bma-Chr11:1154400 1.69E-67 transposed
Bma11g00122 Bma-Chr11:1154400 Bma14g00501 Bma-Chr14:5627796 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00122 - - pvy:116146246 926.776