Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00137 ATGCCGGGTAAAGGAATGAGGAATGTTTTCTTCAAATCTCAGACGCCTTCGAGTTCTCCATCCAGAAGCTTGCCGCCGCTTTCTCCTCACCGGACGCTTTCTGAATCTCTAATCGACGAAAATATCGAGATAGCGGAGGCTCTCATTGCAAAGTGGGATTCTACGCCCTCCACCTCTGTTGCTTTGAGCTCTATGTTCTTTGAAAATCGTGAAGATGCCAAACAATATCTTCAATCTGTTAAGGATTTGCAGACTTCTATGCAATCCCTAGCTGCGCTGCATATGAGCTCTGAGAAGCTTGTTCGCTCGCAGATTTTGATGCAGACGGCCATGAAGACGCTGCAAAAAGAATTTTACCAGATCTTGTCTGCCAATAGAGACTATTTGGATCCTGAATCAGTTTCCACCCACTCCTCGAGAGCGTCGGAGGTTTCGAGTCTTATCTCTGATTTAGAGGACGATTCGGAGGATGAGTTCCGTTTTGTTTCTGATAACATTTCTGAGGTTGAGCGAGTTTCAATGGCTGCGATGGCGGATTTGAAAGCCATTGCTGACTGTATGATCTCCGCCGGCTACGGCAAAGAGTGTGTCAAAATTTACACTGTTATAAGGAAATCGATTATCGACGAGGGGCTCTTCCACCTAGGAGTTGAAAGGCTGACCTTGCAGCAGGTTCAGAAGATGGATTGGGAGGTTTTGGAAATTAAGATTAAAAAATGGTTGAAGGCGGTGAAAGCCGCTGTTAGAACTCTTTTTCACGGAGAGAGAATTCTCTGCGACCACGTCTTCTCCTCTTCCGACTCTATCAGAGAGTCGTGCTTCAGTCAAATTTCCAAAGACGGAGCGAACTATCTGTTTGGATTCCCCGAATTGGTAGCGAAATGCAAGAAAACGCCAGAGAAGATTTTTTCAACTCTGGATATCTACGAGGCCATCGCGGATCTCTGGCCGGAGATTGAATCGATTTTCTTATTCGAATCAACCGCTGTCGTCCGTTCTCAAGTTGTCAATTCGCTTGACAGGCTCGGCGAGGGAGTTTGCGTTATGTTAGCGGATTTCGAAACGGCCATGCAGAAGGACACGACAAAAACTCCGGTCCCAAGCGGCGGAGTTCACCCGCTTACACGCTACGTTATGAACTACATTTCCTTTCTCTCCGATTACAGCGGGATACTATCCGATATAGTAGCAGACTGGCCGTTAAAATTTCAATCTCAGCTACCGGAATCTTTCTTAAACAGCCTCGAGTACGACGAAAGTCCCATAAGCGTACGGCTTGCATGGCTGATTCTTGTTCTCCTCTGCAAACTCGACGGGAAAGTCCAGCTCTACAACGACGTAGCTCTCTCATACATCTTTCTAGCCAACAACCTGCAATACGTCGTGGTAAAAGTACGCACCTCGAACCTCAAGTTCCTGCTCGGAGATGATTGGATTGCAGAACATGAGTCAAAGGTCAAACAGTATTCATCCAACTACGAGAGAATCGGGTGGAACAAAGTGTTATCGTCGTTGCCGGAGAATCCAAACGCGTGGATTTCGCCGGAGGAGGCGAGAGATTATTTCATCAGGTTCAACGCAGCGTTCGAAGAAACGTACCGGAAACAAACTTCGTGGGTTATATCCGACAAAAAACTCCGAGAGGAAATCAAAGTCTCTCTCGGAAGGAAACTCGGCGGCCTGTACAGAAACTTTTACGAGAAAAACCGGGCCGGGTTGATAAGAGAATACGGAAATTCATCGATATCCTTTGTAAGATTTGACCCAGATGACATCGGAAACTACTTGTCGGACTTATTCTACGGAGCCGGCGACGGTGGTTCAACTTCAGGGAGCGTTTCCTCGTCTTCTACGTCGTCTCACCTAAGGCGGTTCCTCGGTCGTTGA 1887 47.11 MPGKGMRNVFFKSQTPSSSPSRSLPPLSPHRTLSESLIDENIEIAEALIAKWDSTPSTSVALSSMFFENREDAKQYLQSVKDLQTSMQSLAALHMSSEKLVRSQILMQTAMKTLQKEFYQILSANRDYLDPESVSTHSSRASEVSSLISDLEDDSEDEFRFVSDNISEVERVSMAAMADLKAIADCMISAGYGKECVKIYTVIRKSIIDEGLFHLGVERLTLQQVQKMDWEVLEIKIKKWLKAVKAAVRTLFHGERILCDHVFSSSDSIRESCFSQISKDGANYLFGFPELVAKCKKTPEKIFSTLDIYEAIADLWPEIESIFLFESTAVVRSQVVNSLDRLGEGVCVMLADFETAMQKDTTKTPVPSGGVHPLTRYVMNYISFLSDYSGILSDIVADWPLKFQSQLPESFLNSLEYDESPISVRLAWLILVLLCKLDGKVQLYNDVALSYIFLANNLQYVVVKVRTSNLKFLLGDDWIAEHESKVKQYSSNYERIGWNKVLSSLPENPNAWISPEEARDYFIRFNAAFEETYRKQTSWVISDKKLREEIKVSLGRKLGGLYRNFYEKNRAGLIREYGNSSISFVRFDPDDIGNYLSDLFYGAGDGGSTSGSVSSSSTSSHLRRFLGR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1219355 1221241 + Bma005603.1 Bma11g00137 90539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00137 628 MobiDBLite consensus disorder prediction 1 31 - -
Bma11g00137 628 MobiDBLite consensus disorder prediction 608 628 - -
Bma11g00137 628 Pfam Exo70 exocyst complex subunit 238 598 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bma11g00137 628 SUPERFAMILY Cullin repeat-like 69 600 IPR016159 -
Bma11g00137 628 Gene3D Exocyst complex component Exo70 49 606 - -
Bma11g00137 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 613 IPR004140 GO:0000145|GO:0006887
Bma11g00137 628 MobiDBLite consensus disorder prediction 10 30 - -
Bma11g00137 628 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00137 K07195 EXOC7, EXO70; exocyst complex component 7 - qsu:112002223 788.875
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma11g00137 Bma14g00483 CCT
Bma07g00116 Bma11g00137 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01661 Bma-Chr4:52427139 Bma11g00137 Bma-Chr11:1219355 6.24E-83 dispersed
Bma11g00137 Bma-Chr11:1219355 Bma15g00313 Bma-Chr15:3022118 7.56E-107 dispersed
Bma01g01893 Bma-Chr1:69735239 Bma11g00137 Bma-Chr11:1219355 3.99E-156 wgd
Bma11g00137 Bma-Chr11:1219355 Bma14g00483 Bma-Chr14:5467529 0 wgd
Bma11g00137 Bma-Chr11:1219355 Bma03g00313 Bma-Chr3:2334721 0 wgd
Bma11g00137 Bma-Chr11:1219355 Bma04g00649 Bma-Chr4:6249251 7.64E-172 wgd
Bma11g00137 Bma-Chr11:1219355 Bma07g00116 Bma-Chr7:1844124 0 wgd
Bma11g00137 Bma-Chr11:1219355 Bma08g00969 Bma-Chr8:48666134 3.13E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00906 . 10 648 EXO70 exocyst subunit family AT5G03540 75.9 2.4e-279 958.0
Bma01g02005 . 3 641 EXO70 exocyst subunit family AT5G03540 71.4 4.8e-264 907.1
Bma01g02005 . 3 641 EXO70 exocyst subunit family AT5G52340 78.5 1.3e-290 995.3
Bma08g00906 . 12 648 EXO70 exocyst subunit family AT5G52340 73.3 8.7e-271 929.5
Bma01g02005 . 147 634 EXO70 exocyst subunit family AT5G52350 62.4 6.8e-169 590.9
Bma08g00906 . 147 650 EXO70 exocyst subunit family AT5G52350 58.3 1.2e-160 563.5
Bma15g00313 BCT 7 607 EXO70 exocyst subunit family AT1G72470 63.6 8.8e-215 743.4
Bma09g00990 BCT 8 608 EXO70 exocyst subunit family AT1G72470 60.3 6.8e-199 690.6
Bma15g00313 BCT 1 605 EXO70 exocyst subunit family AT1G54090 62.0 1.1e-212 736.5
Bma09g00990 BCT 9 606 EXO70 exocyst subunit family AT1G54090 58.2 1.3e-197 686.4
Bma15g00313 BCT 3 606 EXO70 exocyst subunit family AT3G14090 63.8 4.8e-221 764.2
Bma09g00990 BCT 2 607 EXO70 exocyst subunit family AT3G14090 59.4 5.8e-203 704.1
Bma03g01256 CCT 13 650 EXO70 exocyst subunit family AT5G50380 61.4 3.1e-221 765.0
Bma06g00256 CCT 13 648 EXO70 exocyst subunit family AT5G50380 59.1 2.0e-217 752.3
Bma12g01079 . 13 639 EXO70 exocyst subunit family AT5G50380 56.9 2.7e-201 698.7
Bma04g00034 BCT 15 683 EXO70 exocyst subunit family AT4G31540 70.0 8.5e-280 959.5
Bma01g02121 BCT 6 674 EXO70 exocyst subunit family AT4G31540 67.7 2.9e-272 934.5
Bma01g02125 CCT 10 305 EXO70 exocyst subunit family AT4G31540 58.4 1.1e-106 384.4
Bma03g00313 . 42 630 EXO70 exocyst subunit family AT3G55150 51.2 1.6e-160 563.1
Bma14g00483 CCT 1 570 EXO70 exocyst subunit family AT3G55150 50.3 1.5e-153 540.0
Bma04g01661 . 1 199 EXO70 exocyst subunit family AT3G55150 55.1 5.1e-53 206.1
Bma03g00313 . 42 630 EXO70 exocyst subunit family AT2G39380 51.8 2.1e-163 572.8
Bma04g01661 . 1 200 EXO70 exocyst subunit family AT2G39380 54.6 5.8e-57 219.2
Bma04g01661 . 1 200 EXO70 exocyst subunit family AT3G09530 58.5 8.4e-56 215.3
Bma04g01661 . 1 201 EXO70 exocyst subunit family AT3G09520 62.9 7.0e-63 238.8
Bma11g00137 BCT,CCT 11 608 EXO70 exocyst subunit family AT5G59730 53.3 9.5e-169 590.5
Bma07g00116 BCT,CCT 4 578 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-151 533.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00137 Bma_Chr11 FPKM 1.048689 2.015157 4.577339 3.996896 41.949409 42.160221 44.8139 2.083595 2.786608 2.194532