Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00157 AGAGTGAAAGCAAAGATGGGGAAAAGAGCAGAGTTTTTGGTGGCGTTGATCGTGCTGAGCTATGGATTCGTTGGGATGGTTTCTGGGCATTTCGAAGAAGATGAAGATTGGAGGAAAGGAAGATCAACGGAGGACTGGTTTTTGCTGCATGAAAGTAAGCATGTGATGAAGACGGAAGCGGGGGAGATGAAGGTGGTGAGAGGGTCTACGTCCAGAGTTCTTGACAGGCCCATGCACGTTGGTTTCATAAACATGGAACCCAGAAGTCTGTTCATCCCCCAGTATCTCGACTCCAGCTTAATCCTCTTCGTCCGCAGAGGAGAAGCGAAGGTGGGATTCGTGCAACACAGAGATGAGCTGGAGGAGAAGCGGTTGAGGAGAGGCGATGTTTACAGAATCCCAGCTGGTTCAGTTTTCTACTTGGTCAATACCGGAGAAGGACAGAGACTTCAAATAGTTTGCAGTATCGATTCATCGGAAAGCTTGGGAGTTGGTCCTTTCCAGTCGTTCTTCGTCGCCGGGGGAAAATATCCGACCTCCATTCTTGCCGGTTTCGAAACCCAAACCCTTGCTACAGCATTTAACGTCTCGCATGAAGATATGAAGAAGATGCTAACCAGACAACAGGACGGTCCGATCGTCTACGTCGGCGATTCTCACCCACCAAGCATTTGGCAAAAGTTCCTGCAGCTCAAAGAAGAAGACAGACTGAATCAGCTGAATAAAATGGCGGAATTCGATGAGGACTCTGAACAAGAAGAAAAGCAAACTACGTGGTCATGGAGGAAACTTATAACTTCTGAATTTGGGGATGAGAAACGAGAAGGTCAGAAAAAGAAATCCAGAAAGTCAACGGATTCTTGCAACATCTACGACCGACGACCGGACTTCAGAAACAACTACGGTACGAGCGTAACTATCGATGAATCCGATTACTCCCCGCTGAAAAACTCCGGCGTCGGGATTTACCACGTCAATCTCACTGCGGGATCGATGATGGCGCCGCACGTAAACCCGGCGGCCATGGAGTTCGGAATCGTTCTGAAAGGCTGCGGTAGGATTCAGATCGTGTTTCCAAACGGCAGTTTGGCTATGGATGCAGAAGTAAAAGAAGGAAACGTGTTCTTGATTCCGAGGTATTTCCCGTTCTGTCAAATCGCATCAAGAAGCGGACCCTTCGAGTTCTTCGGATTCACGACCTCAGAAAGGAAGAATCGTCCACAGTTCATGGTGGGTGCAAACTCGGTTCTGCAGACTCTCCGCGGTCCGGAGCTGGCGGCGGCGTTCGGGGTGAGCGAGGAGAGGATGGAGAGATTCCTGGATGCGCAGAGTGAAGCGGTGATACTGCCCAGTGCCGAGGTTGCTCCGCCGCACAGGGAGGAGGAGAAGGAGGAATTTGCGGAAGAGAAGGTACACATTAACATCGTGGTCATTGGCCATGTCGACTCTGGCAAGTCGACCACCACAGGTCACTTGATTTACAAGCTAGGAGGAATTGACAAGAGAGTGATTGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGTTAGACAAGCTCAAGGCTGAGCGGGAGCGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATCGATGCTCCTGGACATCGGGATTTTATCAAAAACATGATTACAGGCACCTCCCAAGCTGACTGTGCTGTGCTTATTATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCATGCTTTGCTTGCTTTCACTCTTGGTGTGAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAGTACTCGAAGGGAAGATATGATGAAATAGTGAAGGAAGTGTCATCTTATCTCAAAAAGGTTGGTTACAACCCGGAAAAGATCCCTTTTGTACCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCGACCAACCTCGACTGGTACAAGGGTCCTACCCTCCTGGATGCCCTTGACCTGATCTTGGAACCGAAGAGGCCTTCAGACAAGCCTCTGCGTCTCCCTCTTCAGGACGTATACAAGATCGGCGGTATTGGAACCGTGCCCGTTGGACGGGTTGAGACTGGTGTTGTGAAGCCTGGAATGGTGGTGACTTTTGGCCCCACTGGACTGACAACTGAAGTTAAGTCTGTTGAGATGCACCATGAGGCTCTCCAGGAAGCTCTTCCAGGTGATAATGTGGGTTTCAACGTGAAGAACGTTGCTGTGAAGGATCTGAAGCGTGGTTTTGTTGCTTCCAACTCCAAGGATGATCCTGCCAGGGAAGCTGCCAACTTCACCTCTCAGGTGATCATCATGAACCATCCAGGCCAGATTGGCAACGGCTATGCACCAGTGCTTGATTGCCACACCTGCCACATTGCTGTGAAATTTGCCGAGATCTTGACCAAGATCGACAGACGATCTGGAAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGAGATGCAGGAATGGTGAAGATGGTTCCGACCAAGCCCATGGTGGTGGAGACATTCTCTGAGTACCCTCCTCTTGGTCGTTTTGCTGTGAGAGACATGCGTCAGACTGTGGCCGTCGGAGTTATTAAGAGCGTGGAGAAGAAGGATCCATCAGGTGCCAAGGTCACCAAGTCAGCAGCCAAGAAGGGTGGAAAATGA 2745 49.98 RVKAKMGKRAEFLVALIVLSYGFVGMVSGHFEEDEDWRKGRSTEDWFLLHESKHVMKTEAGEMKVVRGSTSRVLDRPMHVGFINMEPRSLFIPQYLDSSLILFVRRGEAKVGFVQHRDELEEKRLRRGDVYRIPAGSVFYLVNTGEGQRLQIVCSIDSSESLGVGPFQSFFVAGGKYPTSILAGFETQTLATAFNVSHEDMKKMLTRQQDGPIVYVGDSHPPSIWQKFLQLKEEDRLNQLNKMAEFDEDSEQEEKQTTWSWRKLITSEFGDEKREGQKKKSRKSTDSCNIYDRRPDFRNNYGTSVTIDESDYSPLKNSGVGIYHVNLTAGSMMAPHVNPAAMEFGIVLKGCGRIQIVFPNGSLAMDAEVKEGNVFLIPRYFPFCQIASRSGPFEFFGFTTSERKNRPQFMVGANSVLQTLRGPELAAAFGVSEERMERFLDAQSEAVILPSAEVAPPHREEEKEEFAEEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDLILEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKGGK 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1435075 1442467 + Bma005625.1 Bma11g00157 90559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00157 914 CDD EF1_alpha_III 788 891 - -
Bma11g00157 914 PANTHER TRANSLATION FACTOR 468 912 - -
Bma11g00157 914 Hamap Elongation factor Tu [tuf]. 467 897 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bma11g00157 914 Gene3D Jelly Rolls 279 452 IPR014710 -
Bma11g00157 914 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 470 695 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 SUPERFAMILY Translation proteins 696 786 IPR009000 -
Bma11g00157 914 MobiDBLite consensus disorder prediction 271 290 - -
Bma11g00157 914 Gene3D Jelly Rolls 41 227 IPR014710 -
Bma11g00157 914 SUPERFAMILY RmlC-like cupins 51 446 IPR011051 -
Bma11g00157 914 PRINTS GTP-binding elongation factor signature 533 541 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 PRINTS GTP-binding elongation factor signature 569 580 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 PRINTS GTP-binding elongation factor signature 553 563 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 PRINTS GTP-binding elongation factor signature 613 622 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 PRINTS GTP-binding elongation factor signature 474 487 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 714 IPR027417 -
Bma11g00157 914 Pfam Cupin 51 200 IPR006045 -
Bma11g00157 914 Pfam Cupin 289 435 IPR006045 -
Bma11g00157 914 CDD cupin_7S_vicilin-like_N 55 216 - -
Bma11g00157 914 CDD EF1_alpha_II 695 785 - -
Bma11g00157 914 Pfam Elongation factor Tu C-terminal domain 787 894 IPR004160 -
Bma11g00157 914 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 526 541 IPR031157 -
Bma11g00157 914 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 468 912 - -
Bma11g00157 914 Gene3D - 457 692 IPR027417 -
Bma11g00157 914 CDD cupin_7S_vicilin-like_C 295 446 - -
Bma11g00157 914 Pfam Elongation factor Tu GTP binding domain 471 689 IPR000795 GO:0003924|GO:0005525
Bma11g00157 914 Pfam Elongation factor Tu domain 2 713 778 IPR004161 GO:0005525
Bma11g00157 914 Gene3D Translation factors 694 781 - -
Bma11g00157 914 Gene3D Translation factors 788 895 - -
Bma11g00157 914 CDD EF1_alpha 474 692 - -
Bma11g00157 914 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 791 894 IPR009001 -
Bma11g00157 914 SMART Cupin_1_3 288 437 IPR006045 -
Bma11g00157 914 SMART Cupin_1_3 47 202 IPR006045 -
Bma11g00157 914 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 467 898 IPR004539 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00055 Bma-Chr6:885048 Bma11g00157 Bma-Chr11:1435075 2.34E-87 dispersed
Bma11g00156 Bma-Chr11:1429762 Bma11g00157 Bma-Chr11:1435075 0 tandem
Bma11g00157 Bma-Chr11:1435075 Bma11g00158 Bma-Chr11:1437897 0 tandem
Bma03g00766 Bma-Chr3:7009485 Bma11g00157 Bma-Chr11:1435075 3.02E-43 transposed
Bma05g01293 Bma-Chr5:52286158 Bma11g00157 Bma-Chr11:1435075 0 transposed
Bma09g00063 Bma-Chr9:1612204 Bma11g00157 Bma-Chr11:1435075 4.09E-13 transposed
Bma01g02131 Bma-Chr1:77796732 Bma11g00157 Bma-Chr11:1435075 5.74E-71 transposed
Bma11g00157 Bma-Chr11:1435075 Bma03g00087 Bma-Chr3:678748 0 wgd
Bma11g00157 Bma-Chr11:1435075 Bma08g01145 Bma-Chr8:50514532 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00157 K03231 - mnt:21412438 880.167