Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00175 ATGAAGGAGGCGGCCGAGAAGAGCTTGGATCCTAAGCTATGGCACGCCTGCGCCGGCGGGATGGTTCAGATGCCACCGGTGAACTCAAAAGTCTTCTACTTCCCTCAAGGTCATGCCGAACATGCCCAAGCCGCTGTCGATTTCGGTTCAGCCCCGAGAATTCTGCCGCTTATTGCTTGCAGAGTCGCCGGAGTGAAGTTCTTAGCCGACCCTGAAAGTGACGAGGTTTTTGCCAAGGTGAAACTGGTTCCTCTAGGAACGAACGAGCTTGATTCTGACGACGATGGTGGATATGGAGGTAATGGGGCTGAGATTGCAGAAAAGCCTGCTTCTTTTGCGAAGACATTGACTCAATCTGACGCCAACAATGGCGGTGGCTTCTCAGTTCCAAGATACTGTGCGGAGACTATATTTCCACGTCTGGATTACTCTGCTGATCCCCCTGTTCAGACAGTAATCGCTAAGGACGTCCACGGAGAAATTTGGAAATTTCGGCATATTTACAGAGGAACCCCTCGACGCCATTTGTTGACCACCGGATGGAGCACTTTCGTCAACCAGAAGAAGCTCGTCGCCGGAGATTCAATCGTCTTTCTGAGAGACGACAGAGGAGAGCTTTGCGTTGGGATCCGGCGAGCCAGCCGGACTATTGGCTATGCTCTCGATTTCTCTCCGGGGTGGGGTATTGGCTCGGGAAATTCCGCCCCTCCTTATGGGGGATTCTCTATGTTTCTAAAAGGGGACGAAAGCAGATTTATCCGAAATGGGTATTCAAATTCAAGTTCCGGCGGTAATCCGACTGGAAGAGGAAGGGTGTTGCCGGAGTCAGTAATGGAAGGGGTGGCTCTTGCCGGCAGTGGGCTGCCATTTGAGATAGTTTACTATCCTCGAGCAAGCACACCTGAGTTCTGCGTTAGGTACGCATCTGTGAGGGCTGCCATGAGGATTCAATGGTGCTCCGGCATGAGGTTCAAAATGGCATTTGAAACGGAAGATTCCTCTCGGATTAGCTGGTTCATGGGTACCATTTCTGCCGTTCAAGTTGCCGACCCTCTCCACTGGCCTAATTCGCCATGGCGGCTTCTCCAGGTCGCTTGGGACGAACCCGACCTGCTACAAAATGTGAAGCGTGTCAATCCGTGGTTGGTTGAGTTAGTTCCAAACTCACCCGTCATCCACCTCTCGCCTTTCTCGCCTCCGAGAAAGAAATTAAGGATACCATCCTTCTCAGAGCCTCCCCTCGATGGCCAATTTGCAGTGCCATCCTTTCTCAACAATCCTGTTGGGCCGAGTTTTGGTGATTTCACTACTCCTGCAGGCATACAGGGAGCCAGGCATTCTCGATTTGGACTATCTTTGTCGAATCTCCACACTAACGACAAACTGCAATTGGGGCTGTTTCCTTCCAATCTTCGCCCCCTCGATCTATACCCTCGAGTTTCCAACACCAATATAAAATACGAGGCCAAGACGAAAGAAAAAAGCCTTTCGAGCTTTCTGACGATGGGAAATTCTTGCGAGAAATCGGACAAATCTGAAAATGTGAAGAGGCACCAGTTTGTGCTCTTTGGTCAGCCAATCGTTACGGAGCAGCAAATGTCGATTGATTCATCGGCACAGAAAGAAAAACCTCTTCTTCCTAATGGTTCTGAACTTGGAGTAGATATCGGCCAGTGCAAGGTTTTCATGGAGTCTGAAGATGTGGGCCTGACCCTCGATCTTTCCGCTTTCAACTCTTTCGACGAGCTCTATAAACAACTTGCCACCATTTTCGGAGTTGAAACATCGGATGGAAGCAAGAACTTGCTTTACCAAGATTTAGCCGGTGCTGTTAAACACATCGGCGACGAACCCTTCAGTGATTTTAAAAGAAGAGCAAGGAGGCTAGAAATTCTGAAAAACTCGGCAAACGTCGATACAAAAAGGTGA 1929 49.71 MKEAAEKSLDPKLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQAAVDFGSAPRILPLIACRVAGVKFLADPESDEVFAKVKLVPLGTNELDSDDDGGYGGNGAEIAEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRDDRGELCVGIRRASRTIGYALDFSPGWGIGSGNSAPPYGGFSMFLKGDESRFIRNGYSNSSSGGNPTGRGRVLPESVMEGVALAGSGLPFEIVYYPRASTPEFCVRYASVRAAMRIQWCSGMRFKMAFETEDSSRISWFMGTISAVQVADPLHWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVPNSPVIHLSPFSPPRKKLRIPSFSEPPLDGQFAVPSFLNNPVGPSFGDFTTPAGIQGARHSRFGLSLSNLHTNDKLQLGLFPSNLRPLDLYPRVSNTNIKYEAKTKEKSLSSFLTMGNSCEKSDKSENVKRHQFVLFGQPIVTEQQMSIDSSAQKEKPLLPNGSELGVDIGQCKVFMESEDVGLTLDLSAFNSFDELYKQLATIFGVETSDGSKNLLYQDLAGAVKHIGDEPFSDFKRRARRLEILKNSANVDTKR 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1567754 1570026 - Bma005642.1 Bma11g00175 90577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00175 642 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Bma11g00175 642 ProSiteProfiles PB1 domain profile. 556 639 IPR000270 GO:0005515
Bma11g00175 642 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Bma11g00175 642 PANTHER AUXIN RESPONSE FACTOR 552 636 - -
Bma11g00175 642 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 538 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma11g00175 642 SMART B3_2 112 214 IPR003340 GO:0003677
Bma11g00175 642 SUPERFAMILY DNA-binding pseudobarrel domain 109 216 IPR015300 -
Bma11g00175 642 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 552 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma11g00175 642 Gene3D - 318 390 - -
Bma11g00175 642 CDD B3_DNA 111 212 IPR003340 GO:0003677
Bma11g00175 642 Gene3D - 110 213 IPR015300 -
Bma11g00175 642 Pfam Auxin response factor 283 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma11g00175 642 PANTHER AUXIN RESPONSE FACTOR 5 538 - -
Bma11g00175 642 Gene3D - 556 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00860 Bma-Chr1:8090879 Bma11g00175 Bma-Chr11:1567754 4.07E-108 dispersed
Bma11g00175 Bma-Chr11:1567754 Bma15g00074 Bma-Chr15:857350 8.01E-73 dispersed
Bma01g01923 Bma-Chr1:71019323 Bma11g00175 Bma-Chr11:1567754 0 wgd
Bma11g00175 Bma-Chr11:1567754 Bma03g00079 Bma-Chr3:618630 2.29E-177 wgd
Bma11g00175 Bma-Chr11:1567754 Bma04g00608 Bma-Chr4:5796813 0 wgd
Bma11g00175 Bma-Chr11:1567754 Bma08g01153 Bma-Chr8:50555010 2.61E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58011 PF02362 B3 5.70E-22 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00175 - - bhj:120088819 843.188