Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00180 ATGGATGGGCTTCAATTACCAAAGTCAGTCGCCAAGAAAGCTAGAAAATCCTTGAAGGCTAAGGTTTTATCGAGAGTATTCTCTGAAGACTATGAACTAGTGAGGCGAAAAATATTGGACCCTCGAGGCCAAAATTTACGCAGATGGAACAAGATTTTCTTAGTGGCTTGTTTAGTTTCTCTGTTTGTAGACCCTTTATTCTTCTACTTGCCAGTTGTGTGGGATCAAATGTGCATGGAGATTGCAGTTAGTCTCGAAGTCGTTCTCACGGCGATAAGATCCATTGCCGATATCTTCTACATAATCCAGATTTTGATTAAGTTTCGAACGGCTTTTATCGCTCCTTATTCTCGTGTATTTGGGAGAGGAGAGCTCGTTATAGACCCTTCGAAAATCGCCTCGAGATATTTAGCTCATGGTTTCTGGATTGATCTTATGGCTGCTCTGCCTCTTCCTCAGGTCCTGATTTGGATCGTAATTCCTAATCTAGCCGGTTCGACTATGACGAACACGAAGAACTTCCTCCGATTCATCTTGATCGTTCAATATTTTCCGAGACTTTTTCTTATATTTCCCCTCTCGTCGCAAATCATCAAGGCGACCGGAGTTGTAACACAGACAGCATGGGCCGGGGCTGCTTATAATCTCATTCTTTACATGTTGGCAAGCCATGTTTTAGGAGCTTGCTGGTATCTTTTATCGATCGAGCGAGAAGAATCATGCTGGAGAAAAGTTTGCGATCATGAAAATCTGTCCTGTGATTTTGTCTTCTTCGACTGTCACAGAATCAACGAAGCTCGAAGAGGGTCATGGTTTAACTCGAGCAATATTACAACATTATGCGATCCCGGTAATAGTTTCTATAAGTTCGGAATATACGGCGATGCCGTGACGTTTGATGTCACGACTTCCCCGTTCTTCAGGAAATACTTCTTCTGTCTTTGGTGGGGTTTGAGGAATCTGAGTTCTTTGGGACAAAATCTCTCCACCAGCACTTATGTTGGGGAAATAATTTTTGCCATAATCATAGCAACTCTTGGACTGGTTCTGTTTGCTCTACTTATTGGTAACATGCAAACGTATCTTCAGTCTACAACAGTCCGATTGGAAGAGTGGAGGATAAAGAGAAGAGATACTGAACAATGGATGCATCACAGACAGCTTCCGCCGGAGCTGAGACAGTCGGTGAGAAAATATGATCAGTATAAATGGGTTGCGACTCGAGGAGTAGATGAAGAAGCTCTGCTCAAGTGCCTTCCGATGGATCTCCGACGAGACATTAAACGCCATCTCTGCCTCGACCTTGTTCGCAGAGTTCCTTTGTTCGATCAAATGGACGAGCGAACGCTGGATGCAATCTGCGAGAGGCTGAAGCCGGCGTTGAGCACAGAAGGGACGTTTTTGGTTCGAGAAGGCGACCCAGTTAATGCAATGCTGTTTATAATCAGAGGAAACCTTGATTCCTACACCACTAATGGCGGACGAACTGGGTTTTTCAATTCATGCAGAATAGGGCCAGGGGATTTCTGCGGCGAAGAGTTGCTCACGTGGGCGCTGGACCCTCGGCCAGGCGTTGCCCTCCCAAGCTCCACTCGCACTGTGGAAGCCATCTCAGAAGTAGAAGCTTTCGCCCTCATCGCCGAGGATTTGAAGTTCGTAGCCTCGCAATTCAGAAGATTGCATTGCAAACAGCTCCGGCAAAAGTTCAGATTCTACTCGCATCAATGGCGGACTTGGGCGGCTTGTTTTGTTCAGGCCGCTTGGAGGCGTTACAAGAAACGCAAGGTAGCGGCGGAGCTGAGGGCTAGAGAGAGTCAACCGGAGGTTTACTCGACTGAATTACAGATTCCTGCTTCAGCCTTTAGAAATGAAGGGAAGAACAGTCCTGGGTCTGCCATTGTGAGGTCGTTGCAGAAGCCGGAAGAACCAGATTTCTCCGTGGTCGATGAATGA 1953 46.29 MDGLQLPKSVAKKARKSLKAKVLSRVFSEDYELVRRKILDPRGQNLRRWNKIFLVACLVSLFVDPLFFYLPVVWDQMCMEIAVSLEVVLTAIRSIADIFYIIQILIKFRTAFIAPYSRVFGRGELVIDPSKIASRYLAHGFWIDLMAALPLPQVLIWIVIPNLAGSTMTNTKNFLRFILIVQYFPRLFLIFPLSSQIIKATGVVTQTAWAGAAYNLILYMLASHVLGACWYLLSIEREESCWRKVCDHENLSCDFVFFDCHRINEARRGSWFNSSNITTLCDPGNSFYKFGIYGDAVTFDVTTSPFFRKYFFCLWWGLRNLSSLGQNLSTSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTVRLEEWRIKRRDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEALLKCLPMDLRRDIKRHLCLDLVRRVPLFDQMDERTLDAICERLKPALSTEGTFLVREGDPVNAMLFIIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPGVALPSSTRTVEAISEVEAFALIAEDLKFVASQFRRLHCKQLRQKFRFYSHQWRTWAACFVQAAWRRYKKRKVAAELRARESQPEVYSTELQIPASAFRNEGKNSPGSAIVRSLQKPEEPDFSVVDE 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1621434 1623974 - Bma005647.1 Bma11g00180 90582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00180 650 SUPERFAMILY Voltage-gated potassium channels 41 363 - -
Bma11g00180 650 Pfam Ion transport protein 48 368 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma11g00180 650 Gene3D Helix hairpin bin 368 432 - -
Bma11g00180 650 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 11 646 - -
Bma11g00180 650 MobiDBLite consensus disorder prediction 621 650 - -
Bma11g00180 650 Gene3D Jelly Rolls 439 559 IPR014710 -
Bma11g00180 650 SUPERFAMILY cAMP-binding domain-like 371 566 IPR018490 -
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 93 103 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 221 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 104 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 310 327 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 354 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 336 347 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PRINTS EAG/ELK/ERG potassium channel family signature 404 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma11g00180 650 PANTHER PROTEIN CNGC15A 11 646 - -
Bma11g00180 650 ProSiteProfiles cAMP/cGMP binding motif profile. 441 522 IPR000595 -
Bma11g00180 650 CDD CAP_ED 441 569 IPR000595 -
Bma11g00180 650 Gene3D - 52 365 - -
Bma11g00180 650 SMART cnmp_10 441 569 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00180 Bma-Chr11:1621434 Bma11g00665 Bma-Chr11:12624647 0 dispersed
Bma12g01266 Bma-Chr12:45683027 Bma11g00180 Bma-Chr11:1621434 1.15E-139 dispersed
Bma12g01267 Bma-Chr12:45691879 Bma11g00180 Bma-Chr11:1621434 8.00E-139 dispersed
Bma11g00180 Bma-Chr11:1621434 Bma08g00382 Bma-Chr8:8627202 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00180 K05391 - csv:101210775 1069.68