Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00199 TCAGATCAGATGGAACCAATCCCCGGCGCTAACCCCCTTCTGCAATTCAGTGATTTCGAGCTGCATGATTTCATTGCTGACCCTAATTTCAATCAGTTTGTTGAGCTGATTCGCGGCGAACACGAAGATCCCATTTTGAACTTCGATCTCGATCTTATCAATGGCTCTTTCGCCCATACTGGGTTTAGTGTGAGCCCTGAATTTGGATTTGATTCGAATGCAGTTGCTGCGTCAGATCCGAATTCTGTGTTTGAGGGGCTGGCGAGTTTTGATGCAGGAGAAATGAACGGAAAGGAAGGAGAAGAGGAAGATGATAATGACGGCGACGATTCTTCTGCAACTACTACGACAATGGCGACGAAAGGGACGAAGCTTGATCGGTCAAGAACTTTGATATCGGAGAGAAGAAGAAGAGGGAGGATGAAGGAGAAGCTTTACGCTTTACGTGCTTTAGTTCCTAACATAACAAAGATGGACAAGGCCTCCATTGTAGGAGACGCTATTTTGCACGTGAAAGAGCTTCAAATGCAGGCGAAGAAGCTCAAATCAGAGATAGCTGTTCTTGAAGCATCCATGGCTGCATCTGGAAGCTATCAAGGCTTAACTGAAAACCCTAAGAAAAAAATACAAGCTCCTCTCAGTCATAACCTAATCGTTCAAAAGAAAATAATTGAACAGATGGACGTGTTTCAAGTGGAAGAAAGAGGGTTTTACGTGAGACTGGTGTGTGAAAGAGGAGAAGGCGTAGCCATAGCTCTTTACAAAGTTCTTGAATCGCTTGCTAACTTCAATCTTCAGAGCTCCAATTTGGCTATGGAGTCTGAGAGATTTGTACTCACAGCTACCATGAACGTGAGGCATTGCGAGCAGGATATCAATTTGCCAAATTTGAAGCTTTGGGTGGCTGGGGCTCTTCTTAACCAAGGATTTGAATTCAAACCACAATTATAA 951 43.95 SDQMEPIPGANPLLQFSDFELHDFIADPNFNQFVELIRGEHEDPILNFDLDLINGSFAHTGFSVSPEFGFDSNAVAASDPNSVFEGLASFDAGEMNGKEGEEEDDNDGDDSSATTTTMATKGTKLDRSRTLISERRRRGRMKEKLYALRALVPNITKMDKASIVGDAILHVKELQMQAKKLKSEIAVLEASMAASGSYQGLTENPKKKIQAPLSHNLIVQKKIIEQMDVFQVEERGFYVRLVCERGEGVAIALYKVLESLANFNLQSSNLAMESERFVLTATMNVRHCEQDINLPNLKLWVAGALLNQGFEFKPQL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1770220 1771441 + Bma005666.1 Bma11g00199 90601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00199 316 MobiDBLite consensus disorder prediction 93 129 - -
Bma11g00199 316 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 78 312 - -
Bma11g00199 316 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 78 312 - -
Bma11g00199 316 Gene3D - 124 197 IPR036638 GO:0046983
Bma11g00199 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Bma11g00199 316 Pfam Helix-loop-helix DNA-binding domain 130 175 IPR011598 GO:0046983
Bma11g00199 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 194 IPR036638 GO:0046983
Bma11g00199 316 SMART finulus 131 180 IPR011598 GO:0046983
Bma11g00199 316 MobiDBLite consensus disorder prediction 111 126 - -
Bma11g00199 316 Coils Coil 171 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g01474 Bma11g00199 CCT
Bma11g00199 Bma14g00439 CCT
Bma07g00170 Bma11g00199 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00199 Bma-Chr11:1770220 Bma14g01796 Bma-Chr14:38542509 5.66E-20 dispersed
Bma11g00199 Bma-Chr11:1770220 Bma14g00439 Bma-Chr14:5095538 3.91E-106 wgd
Bma11g00199 Bma-Chr11:1770220 Bma07g00170 Bma-Chr7:2274279 2.33E-162 wgd
Bma11g00199 Bma-Chr11:1770220 Bma07g01474 Bma-Chr7:50374715 1.46E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58013 PF00010 HLH 3.10E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00199 - - qsu:112032263 326.635