Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00199 | TCAGATCAGATGGAACCAATCCCCGGCGCTAACCCCCTTCTGCAATTCAGTGATTTCGAGCTGCATGATTTCATTGCTGACCCTAATTTCAATCAGTTTGTTGAGCTGATTCGCGGCGAACACGAAGATCCCATTTTGAACTTCGATCTCGATCTTATCAATGGCTCTTTCGCCCATACTGGGTTTAGTGTGAGCCCTGAATTTGGATTTGATTCGAATGCAGTTGCTGCGTCAGATCCGAATTCTGTGTTTGAGGGGCTGGCGAGTTTTGATGCAGGAGAAATGAACGGAAAGGAAGGAGAAGAGGAAGATGATAATGACGGCGACGATTCTTCTGCAACTACTACGACAATGGCGACGAAAGGGACGAAGCTTGATCGGTCAAGAACTTTGATATCGGAGAGAAGAAGAAGAGGGAGGATGAAGGAGAAGCTTTACGCTTTACGTGCTTTAGTTCCTAACATAACAAAGATGGACAAGGCCTCCATTGTAGGAGACGCTATTTTGCACGTGAAAGAGCTTCAAATGCAGGCGAAGAAGCTCAAATCAGAGATAGCTGTTCTTGAAGCATCCATGGCTGCATCTGGAAGCTATCAAGGCTTAACTGAAAACCCTAAGAAAAAAATACAAGCTCCTCTCAGTCATAACCTAATCGTTCAAAAGAAAATAATTGAACAGATGGACGTGTTTCAAGTGGAAGAAAGAGGGTTTTACGTGAGACTGGTGTGTGAAAGAGGAGAAGGCGTAGCCATAGCTCTTTACAAAGTTCTTGAATCGCTTGCTAACTTCAATCTTCAGAGCTCCAATTTGGCTATGGAGTCTGAGAGATTTGTACTCACAGCTACCATGAACGTGAGGCATTGCGAGCAGGATATCAATTTGCCAAATTTGAAGCTTTGGGTGGCTGGGGCTCTTCTTAACCAAGGATTTGAATTCAAACCACAATTATAA | 951 | 43.95 | SDQMEPIPGANPLLQFSDFELHDFIADPNFNQFVELIRGEHEDPILNFDLDLINGSFAHTGFSVSPEFGFDSNAVAASDPNSVFEGLASFDAGEMNGKEGEEEDDNDGDDSSATTTTMATKGTKLDRSRTLISERRRRGRMKEKLYALRALVPNITKMDKASIVGDAILHVKELQMQAKKLKSEIAVLEASMAASGSYQGLTENPKKKIQAPLSHNLIVQKKIIEQMDVFQVEERGFYVRLVCERGEGVAIALYKVLESLANFNLQSSNLAMESERFVLTATMNVRHCEQDINLPNLKLWVAGALLNQGFEFKPQL | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1770220 | 1771441 | + | Bma005666.1 | Bma11g00199 | 90601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00199 | 316 | MobiDBLite | consensus disorder prediction | 93 | 129 | - | - | |
Bma11g00199 | 316 | PANTHER | TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | 78 | 312 | - | - | |
Bma11g00199 | 316 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 78 | 312 | - | - | |
Bma11g00199 | 316 | Gene3D | - | 124 | 197 | IPR036638 | GO:0046983 | |
Bma11g00199 | 316 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 125 | 174 | IPR011598 | GO:0046983 | |
Bma11g00199 | 316 | Pfam | Helix-loop-helix DNA-binding domain | 130 | 175 | IPR011598 | GO:0046983 | |
Bma11g00199 | 316 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 127 | 194 | IPR036638 | GO:0046983 | |
Bma11g00199 | 316 | SMART | finulus | 131 | 180 | IPR011598 | GO:0046983 | |
Bma11g00199 | 316 | MobiDBLite | consensus disorder prediction | 111 | 126 | - | - | |
Bma11g00199 | 316 | Coils | Coil | 171 | 191 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma07g01474 | Bma11g00199 | CCT | |
Bma11g00199 | Bma14g00439 | CCT | |
Bma07g00170 | Bma11g00199 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00199 | Bma-Chr11:1770220 | Bma14g01796 | Bma-Chr14:38542509 | 5.66E-20 | dispersed | |
Bma11g00199 | Bma-Chr11:1770220 | Bma14g00439 | Bma-Chr14:5095538 | 3.91E-106 | wgd | |
Bma11g00199 | Bma-Chr11:1770220 | Bma07g00170 | Bma-Chr7:2274279 | 2.33E-162 | wgd | |
Bma11g00199 | Bma-Chr11:1770220 | Bma07g01474 | Bma-Chr7:50374715 | 1.46E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58013 | PF00010 | HLH | 3.10E-08 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00199 | - | - | qsu:112032263 | 326.635 |