Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00219 ATGGGCGATAGTCGTAAATGGAGTCGTACTGATAAGCGGAGCTCTAAGAAGCAGAAACTAATTCGGACCGCCGAAGAAGAGCTTGAGTCCAAACTAGGGTTTGATGTATTCTCCGAAGGCGAAAAAAGACTTGGATGGCTACTAACTTTCGCTTCCTCATCTTGGGAGGATCAGGACACCAAGAATGTCTATAGCTGTGTTGATTTATATTTTGTCACACAGGATGGCACCAGTTTTAAATCAAAATATAAATTCCGTCCGTATTTCTATGCAGCTACAAAGCATAAAATGGAAATGGATGTCGAAGCATATCTGAGGCGACGTTATGAAAGTCAAATTGCTGATATTGAAATTATAGAAAAAGAGGACCTTGATCTTAAAAACCATTTGTCTGGCTTGCACAAGTCCTATCTAAAGTTATGTTTTGATACCATTCAAGATTTGATGAATGTGAAAAGTGAACTTATGCATGTCATTGAAAGAAATAGGGCAAAATCTGACGCTGCAGAAGCATATGATTCAATTTTATCTGGAAAAAGAGAACAAAGACTTCAAGATTCTCTAGAATGTATTGTGGATCTTCGAGAGTATGATGTTCCTTACCATGTTCGTTTCGCTATTGATAATGATATACGATGTGGACAGTGGTATGATGTCAGTGTATCCAGCTCTGGGGTTAAGCTTGAGAGAAGGACAGATCTTCTGCAACGCGCTGAAGTACACATATGTGCCTTTGATATTGAGACCACAAAACTTCCTTTGAAATTCCCAGATGCTGAATACGACAGCGTAATGATGATTTCATACATGGTTGATGGTCAAGGGTATCTGATCATCAACAGAGAGTGTGTTGGGGATGACATAGAGGATTTGGAATACACTCCAAAACCAGAATTTGAAGGGTTCTTTAAAGTGACGAATGTAAAAACCGAGGTAGAGCTTCTTAGACAGTGGTTCACCCATATGCAGGAGGTGAAGCCTGGCATCTACGTCACATATAATGGTGATTATTTTGATTGGCCATTCCTAGAAACCAGAGCCGCTTTTCATGGATTTAGAATGAGTGATGAATTAGGATTTCAATGTGACAAGAATCAGGGAGAATGCCGTGCAAAATTTGCTTGTCATTTGGATTGCTTTGCATGGGTAAAGCGGGATAGTTATCTTCCTCAAGGTAGCCAGGGCCTGAAGGCTGTTACTAAGGCAAAATTAGGATATGATCCCCTTGAGGTTAATCCTGAAGATATGGTTCGATTAGCAAAGGAAATGCCTCAGATGATGGCCTCTTATTCCGTATCTGATGCTGTTGCCACATACTACTTGTATATGACATACGTCCATCCGTTCATTTTTTCTCTAGCTACCATTATTCCAATGTCACCTGATGAGGTTTTGCGTAAGGGTAGTGGGACTCTATGTGAAATGCTTCTTATGGTCCAGGCTTACAAAGCAAATGTTATATGTCCTAACAAGCATCAGAATGATCCAGAGAAGTTCCATGACAACCGGCTTCTTGAGAGTGAAACATATATAGGAGGCCATGTGGAATGCCTTGAGAGTGGTGTTTTTAGATCTGACCTTCCTACTAGTTTTAGACTCGATCCAGAAGCTTATGATCTGCTGATAAAAAACTTGGATAGAGATCTGCATTATGCCATACAAGTAGAAGGTAAGATGGAGTTAGAACTAGTGTCAAATTACGAAGAAGTGAAGACAGCTATTATGGAAAAGCTTGTGAGGTTGCGAGACGAACCTATACATGAAGAATGCCCTCTTATATATCATCTTGATGTAGCTGCCATGTATCCAAATATTATTCTTACAAACAGGCTTCAGCCACCATCAATAGTTATAGATGAGGTTTGTACTGCTTGTGATTTCAACCGGCCTGGAAAAACTTGTCTGAGAAAACTTGAATGGGTTTGGCGTGGTGAGGTCTTCATGGCTAAAAAAAGCGATTATTATCACTTGAAGAAACAAATTGAGTCAGAGTTTGTTGATAATGGCGACAATAAATTTTCAAAATCTTTTCTTGACCTGCCTAAAATGGAGCAGCAAGTAAAGCTTAAAGAGCGTTTAAAGAAATATTGTCAAAAGGCTTATAAAAGAGTGCTTGACAAGCCAGTCACTGAACTTCGAGAAGCAGGGATCTGTATGAGAGAAAATTCCTTTTACGTTGACACTGTTCGCAGCTTTCGAGATAGGAGGTATGAATACAAAGGACTAAATAAGACTTGGAAGGGGAAGCTGTCTGAAGCCAAAGCTAGTGGAAATTCTATTAAGATCCAGGAAGCGCAAGATATGGTAGTTCTATATGATTCATTACAGCTAGCTCACAAATGTATACTTAACTCCTTCTATGGATATGTTATGCGGAAGGGAGCAAGATGGTACTCTATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTTTACTAATTGAAAAAATTGGAAAACCACTTGAACTTGACACAGATGGTATTTGGTGTGCACTTCCTGGATCTTTTCCTGAGAACTTTACTTTCAAAACAAAAGATCTGACGAAGAAGCTCACAATCTCATATCCATGTGTGATGCTTAATGTTGACGTGGCATTGAACAATACAAATGATCAATATCAGGTTCTCACAGACCCTGTCAGGAAAATATACTCAACTCATAGTGAATGCTCCATCGAGTTTGAAGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCGAAGGAAGAGGGTATTTTGATTAAGAAGAGATATGCTGTGTTTAATGATGATGGGACACTTGCTGAGCTGAAAGGTTTTGAGATCAAACGAAGAGGCGAGCTCAAGCTCATCAAAGTTTTCCAGGCCGAGCTTTTTGACAAGTTTCTCCATGGGTCAACTCTGGAGGAATGTTATTCAGCTGTTGCAGCTGTCGCAAATCGATGGCTTGATCTTCTAGATAATCAAGGAAAAGACGTCGCTGATAGCGAGTTACTTGATTACATATCAGAATCAAGTACAATGAGCAAGTCTTTGGCAGAATATGGTGAACAAAAATCATGCGCTGTGACGACTGCTCGACGTCTTGCTGATTTTCTCGGGGATACAATGGTCAAAGATAAAGGCCTACGTTGTGCATACATCGTTGCATGTGAACCAAAGGGAACACCTGTTAGTGAACGTGCTGTTCCTGTAGCTATTTTTGAGACTGATGCAGATATTGTGAAGTTTTACGTACGAAAATGGTGCAAGATTTCATCAGAAGTTGGCATTAGATCCATTATTGATTGGTCTTATTACAAGCAACGGCTCTCTTCAGCAATTCAAAAAATCGTAACAATTCCTGCTGCCATGCAAAAGGTTGCTAACCCTGTCCCTAGAGTAGTTCATCCTGATTGGCTGTATAAAAAGGTTCGTGAGAAGGAGGACAAATTTCGGCAACGGAAGCTTGTTGATATATTCAACACCTTGAGGAGGGATACCTTTTCCAAAAAGGATGGTGTTTCAACCTTCACCAATCATGTTATTAATGAAGAGAAGGCCGACGATATAGAAGATTTCCAAAAGAAAATAGACTCTGTAGATAGACCAAGACCCATAGTTCATTGCCATAAAAATAATGCCGTGAGAAATCCAGTCAATGGAAGTGTACAGATGGATTCCCTGGAACAGAAAAGACATAAAGTGCATGAACCAACTTCACCAAGACATTTAAAAAATGTTGACAGAAAGGTAGATTACCAGGGGTGGCTTGAAACTGAGAAAGTCAGGTGGAAGAATACATTGGACAGGAGGAAGAAGCAGAGATTGGCAAATTCAAGGATTCCACTTCATGCTGATGGGGTTGGTCGGGAGCTGGGGAATTCTATGAGTCATAAAGAAGGTCAAGGAAGAAAAGGAGTTAGTTCATATTTTAAGAGGCATGATATAGCCTTAACAAATTGCTATTGGCAGATTTTACAGCTCGTTCCTGGTTCAAAGAGTGGACAGTTTTTTGCATGGGTTGTTGTTGAAGGAGTCATGCTTAAAGTTTCCATTACTGTTCCTAGAATGTTTTACCTCAACTCCAAGGCTCCTACAGCAGAAACATTCGTAGCAAGGCGTGTTAACAAGATCCTTCCTCATGGAAGGCATAACAATAATCTCTATGAGGTTGTTATTGATGAATGCCATTTTAAGACGCTAAGCCACAAGCTTGCAGCTCTTCTTGCGGATCCCCAAGTTGAGGGGATTTATGAAACCAAACTACCATTGGACTATAATTCCATCGTCCACCTTGGTTGTGTCTGTAAACCTGATAAAACTGCTAAGAAACAGACTTTTCAGGACGAGTGGAATCTGAATGAACTGCACATGAAGACTACAGCAGAATGCAATTATTTGGAAAAATCCATCTCTTTCTTCTACTTGTATAATAGCTTTTTCATATGGAACTAG 4440 39.98 MGDSRKWSRTDKRSSKKQKLIRTAEEELESKLGFDVFSEGEKRLGWLLTFASSSWEDQDTKNVYSCVDLYFVTQDGTSFKSKYKFRPYFYAATKHKMEMDVEAYLRRRYESQIADIEIIEKEDLDLKNHLSGLHKSYLKLCFDTIQDLMNVKSELMHVIERNRAKSDAAEAYDSILSGKREQRLQDSLECIVDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSSGVKLERRTDLLQRAEVHICAFDIETTKLPLKFPDAEYDSVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGFFKVTNVKTEVELLRQWFTHMQEVKPGIYVTYNGDYFDWPFLETRAAFHGFRMSDELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRLAKEMPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQNDPEKFHDNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPEAYDLLIKNLDRDLHYAIQVEGKMELELVSNYEEVKTAIMEKLVRLRDEPIHEECPLIYHLDVAAMYPNIILTNRLQPPSIVIDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDNGDNKFSKSFLDLPKMEQQVKLKERLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKTWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDLTKKLTISYPCVMLNVDVALNNTNDQYQVLTDPVRKIYSTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVAAVANRWLDLLDNQGKDVADSELLDYISESSTMSKSLAEYGEQKSCAVTTARRLADFLGDTMVKDKGLRCAYIVACEPKGTPVSERAVPVAIFETDADIVKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVANPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFNTLRRDTFSKKDGVSTFTNHVINEEKADDIEDFQKKIDSVDRPRPIVHCHKNNAVRNPVNGSVQMDSLEQKRHKVHEPTSPRHLKNVDRKVDYQGWLETEKVRWKNTLDRRKKQRLANSRIPLHADGVGRELGNSMSHKEGQGRKGVSSYFKRHDIALTNCYWQILQLVPGSKSGQFFAWVVVEGVMLKVSITVPRMFYLNSKAPTAETFVARRVNKILPHGRHNNNLYEVVIDECHFKTLSHKLAALLADPQVEGIYETKLPLDYNSIVHLGCVCKPDKTAKKQTFQDEWNLNELHMKTTAECNYLEKSISFFYLYNSFFIWN 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1930754 1954335 + Bma005687.1 Bma11g00219 90621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00219 1479 Coils Coil 564 584 - -
Bma11g00219 1479 Gene3D Palm domain of DNA polymerase 571 936 IPR023211 -
Bma11g00219 1479 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 31 1475 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Bma11g00219 1479 CDD DNA_polB_epsilon_exo 239 443 - -
Bma11g00219 1479 Gene3D - 237 467 IPR036397 GO:0003676
Bma11g00219 1479 Gene3D DNA Polymerase, chain B, domain 1 55 231 - -
Bma11g00219 1479 SUPERFAMILY DNA/RNA polymerases 468 1140 IPR043502 -
Bma11g00219 1479 Pfam DNA polymerase family B, exonuclease domain 73 399 IPR006133 -
Bma11g00219 1479 SMART polmehr3 238 841 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma11g00219 1479 Pfam DNA polymerase family B 758 1064 IPR006134 GO:0000166|GO:0003677
Bma11g00219 1479 SUPERFAMILY Ribonuclease H-like 65 489 IPR012337 -
Bma11g00219 1479 CDD POLBc_epsilon 502 1121 - -
Bma11g00219 1479 Gene3D - 940 1124 IPR042087 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00219 K02324 - qsu:111996722 2486.45