Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00246 CTAAAAGTGACAGGTTCACCTTCTGGCAATAATCTCACACCGGCAGGTCCATGCCGATATGACAGTTCCCTAGGTCTCTTGACGAAAAAGTTTATCAACTTGATCAAACAAGCAGAAGATGGTATCCTTGACCTCAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGAGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTGATAGACAAGAAGCTGAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAAGCCAGGGGACGATGATGAAAATTTTACTAGTTTACAAGCAGAAATCGAAAAACTTTCCATTGAGGAGAGTGGATTAGATGAACAAATAAGACAAATGGAGGAAAGATTACGGGGCCTCAGTGAAGCTGAGAACAATCAAAGGTGGCTTTTTGTCACCGAGGAAGATATCAAAGGTTTGCCTTGCTTTCAGAATGAAACGTTAATAGCTATCAAGGCTCCACATGGGACTATGTTAGAAGTACCCGATCCTGATGAGGCTGTTGACTATCCCCAGAGGAGATACAGGATAGCCCTCAGAAGCACAATGGGTCCTATAGATGTTTACCTTGTTAGTAAATTTGAAGAGAAATTTGAGGAGGTTAATGGTGTTGAAGTACCTTTGATCTCAAACTTGCCTTCAACTTCCGGATACAGTGAGGCTCCCGCAACAGCAATGGAAGTAGAAGATAGCAGAGGGAATGATGCTGGAATGCACGAACCAGATGTTCACCAGATGTGTTCGGATCTTAATGATTCACAGGATTTTGTGGGTGGGATCATGAAGATTATTCCCTCAGTAGTGGATAGTGATGCCGATTACTGGCTTCTATCGGGCGCAGATGTTAGCATTACTGACATATGGAGAACTGAAACTGGTGTTGAATGGGATGATTTGGGTACACTTCATGAAGATTATCCTATGACCAGCATTGATGGGATAGCCGATGTTGAATTGCCTCTTCCGCAGCCACCGGCACGGTCAGTTGCAGATGAATTGCCTTCTGATTCTAAACCTTCTGGAAGT 1050 42.95 LKVTGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIDKKLKNRIQWKGLDVSKPGDDDENFTSLQAEIEKLSIEESGLDEQIRQMEERLRGLSEAENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTMLEVPDPDEAVDYPQRRYRIALRSTMGPIDVYLVSKFEEKFEEVNGVEVPLISNLPSTSGYSEAPATAMEVEDSRGNDAGMHEPDVHQMCSDLNDSQDFVGGIMKIIPSVVDSDADYWLLSGADVSITDIWRTETGVEWDDLGTLHEDYPMTSIDGIADVELPLPQPPARSVADELPSDSKPSGS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2168670 2171503 - Bma030425 Bma11g00246 90648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00246 350 SUPERFAMILY Winged helix DNA-binding domain 19 82 IPR036390 -
Bma11g00246 350 Gene3D - 13 86 IPR036388 -
Bma11g00246 350 Gene3D - 93 201 - -
Bma11g00246 350 PANTHER TRANSCRIPTION FACTOR E2F 4 335 IPR015633 GO:0000978|GO:0006357
Bma11g00246 350 Pfam E2F/DP family winged-helix DNA-binding domain 21 84 IPR003316 GO:0005667|GO:0006355
Bma11g00246 350 PANTHER TRANSCRIPTION FACTOR E2FB 4 335 - -
Bma11g00246 350 CDD E2F_DD 99 201 IPR032198 GO:0046983
Bma11g00246 350 Coils Coil 35 55 - -
Bma11g00246 350 Coils Coil 104 134 - -
Bma11g00246 350 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Bma11g00246 350 Pfam E2F transcription factor CC-MB domain 100 200 IPR032198 GO:0046983
Bma11g00246 350 SUPERFAMILY E2F-DP heterodimerization region 96 201 IPR037241 -
Bma11g00246 350 MobiDBLite consensus disorder prediction 327 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00205 Bma11g00246 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00537 Bma-Chr4:4712663 Bma11g00246 Bma-Chr11:2168670 1.51E-137 dispersed
Bma11g00246 Bma-Chr11:2168670 Bma07g00205 Bma-Chr7:2489691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58020 PF16421 E2F_CC-MB 6.50E-33 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00246 K06620 - csv:101219318 528.48