Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00246 CTAAAAGTGACAGGTTCACCTTCTGGCAATAATCTCACACCGGCAGGTCCATGCCGATATGACAGTTCCCTAGGTCTCTTGACGAAAAAGTTTATCAACTTGATCAAACAAGCAGAAGATGGTATCCTTGACCTCAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGAGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTGATAGACAAGAAGCTGAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAAGCCAGGGGACGATGATGAAAATTTTACTAGTTTACAAGCAGAAATCGAAAAACTTTCCATTGAGGAGAGTGGATTAGATGAACAAATAAGACAAATGGAGGAAAGATTACGGGGCCTCAGTGAAGCTGAGAACAATCAAAGGTGGCTTTTTGTCACCGAGGAAGATATCAAAGGTTTGCCTTGCTTTCAGAATGAAACGTTAATAGCTATCAAGGCTCCACATGGGACTATGTTAGAAGTACCCGATCCTGATGAGGCTGTTGACTATCCCCAGAGGAGATACAGGATAGCCCTCAGAAGCACAATGGGTCCTATAGATGTTTACCTTGTTAGTAAATTTGAAGAGAAATTTGAGGAGGTTAATGGTGTTGAAGTACCTTTGATCTCAAACTTGCCTTCAACTTCCGGATACAGTGAGGCTCCCGCAACAGCAATGGAAGTAGAAGATAGCAGAGGGAATGATGCTGGAATGCACGAACCAGATGTTCACCAGATGTGTTCGGATCTTAATGATTCACAGGATTTTGTGGGTGGGATCATGAAGATTATTCCCTCAGTAGTGGATAGTGATGCCGATTACTGGCTTCTATCGGGCGCAGATGTTAGCATTACTGACATATGGAGAACTGAAACTGGTGTTGAATGGGATGATTTGGGTACACTTCATGAAGATTATCCTATGACCAGCATTGATGGGATAGCCGATGTTGAATTGCCTCTTCCGCAGCCACCGGCACGGTCAGTTGCAGATGAATTGCCTTCTGATTCTAAACCTTCTGGAAGT 1050 42.95 LKVTGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIDKKLKNRIQWKGLDVSKPGDDDENFTSLQAEIEKLSIEESGLDEQIRQMEERLRGLSEAENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTMLEVPDPDEAVDYPQRRYRIALRSTMGPIDVYLVSKFEEKFEEVNGVEVPLISNLPSTSGYSEAPATAMEVEDSRGNDAGMHEPDVHQMCSDLNDSQDFVGGIMKIIPSVVDSDADYWLLSGADVSITDIWRTETGVEWDDLGTLHEDYPMTSIDGIADVELPLPQPPARSVADELPSDSKPSGS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2168670 2171503 - Bma030425 Bma11g00246 90648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00246 350 SUPERFAMILY Winged helix DNA-binding domain 19 82 IPR036390 -
Bma11g00246 350 Gene3D - 13 86 IPR036388 -
Bma11g00246 350 Gene3D - 93 201 - -
Bma11g00246 350 PANTHER TRANSCRIPTION FACTOR E2F 4 335 IPR015633 GO:0000978|GO:0006357
Bma11g00246 350 Pfam E2F/DP family winged-helix DNA-binding domain 21 84 IPR003316 GO:0005667|GO:0006355
Bma11g00246 350 PANTHER TRANSCRIPTION FACTOR E2FB 4 335 - -
Bma11g00246 350 CDD E2F_DD 99 201 IPR032198 GO:0046983
Bma11g00246 350 Coils Coil 35 55 - -
Bma11g00246 350 Coils Coil 104 134 - -
Bma11g00246 350 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Bma11g00246 350 Pfam E2F transcription factor CC-MB domain 100 200 IPR032198 GO:0046983
Bma11g00246 350 SUPERFAMILY E2F-DP heterodimerization region 96 201 IPR037241 -
Bma11g00246 350 MobiDBLite consensus disorder prediction 327 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00246 K06620 E2F3; transcription factor E2F3 - csv:101219318 528.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00205 Bma11g00246 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00537 Bma-Chr4:4712663 Bma11g00246 Bma-Chr11:2168670 1.51E-137 dispersed
Bma11g00246 Bma-Chr11:2168670 Bma07g00205 Bma-Chr7:2489691 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58020 PF16421 E2F_CC-MB 6.50E-33 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00246 Bma_Chr11 FPKM 2.597424 0.724983 37.946812 42.378639 1.741522 2.270756 1.49498 4.608923 4.368254 2.938075