Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00256 | ATGTCTTTGGAGTTGATGGCCTCCGAACGTATCTGTTATGTTTACTGCAACTTCTGCAACACTGTTTTGGCGGTAAGCGTTCCATGCAGTAGCATATTCAACATCGTGACAGTAAGATGTGGGCACTGCACCAATTTGCTGTCTGTGAATGTGGGAGCTTCCCTATTTCCTGCTCAAGACTCTCAGCAGCTAAGTCCTGGGGTTTCCAGCACAGACAGTGGTGGTTCTTCTTCCAAATCTACTAAAGTAGGAGCTTTTGAGTTTGTGGATCATGAACCACCTAGACTGCCTCCAGTTCGCCCTCCAGAGAAAAGACAGCGCCTTCCTTCTGCTTATAACAGGTTCATTAAAGAGGAGATCCAGAGGATTAAAGCTAGTAATCCAGACATAACCCACAGAGAAGCTTTTAGCACGGCAGCTAAAAATTGGGCACATTTTCCTCACATCCATTTTGGGTTGAAGACAACGGAGGGAAACAAGCATGCAAAGTTGGACAATTCATTGGCAGGCGAGGGGATCAATAAGAAGGCAAAGACTAACGGATTCTTCTAA | 552 | 45.47 | MSLELMASERICYVYCNFCNTVLAVSVPCSSIFNIVTVRCGHCTNLLSVNVGASLFPAQDSQQLSPGVSSTDSGGSSSKSTKVGAFEFVDHEPPRLPPVRPPEKRQRLPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGLKTTEGNKHAKLDNSLAGEGINKKAKTNGFF | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2247422 | 2251545 | - | Bma005716.1 | Bma11g00256 | 90658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00256 | 183 | SUPERFAMILY | HMG-box | 98 | 146 | IPR036910 | - | |
Bma11g00256 | 183 | PANTHER | PROTEIN YABBY 6-RELATED | 6 | 175 | IPR006780 | GO:0007275 | |
Bma11g00256 | 183 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Bma11g00256 | 183 | Gene3D | High mobility group box domain | 95 | 148 | IPR036910 | - | |
Bma11g00256 | 183 | Pfam | YABBY protein | 7 | 153 | IPR006780 | GO:0007275 | |
Bma11g00256 | 183 | CDD | HMG-box | 107 | 143 | - | - | |
Bma11g00256 | 183 | PANTHER | AXIAL REGULATOR YABBY 2-RELATED | 6 | 175 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00256 | Bma-Chr11:2247422 | Bma11g00817 | Bma-Chr11:25431353 | 6.20E-61 | dispersed | |
Bma11g00256 | Bma-Chr11:2247422 | Bma07g00218 | Bma-Chr7:2604726 | 2.17E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58021 | PF04690 | YABBY | 8.70E-67 | CL0114 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00256 | K25796 | - | zju:107410267 | 261.151 |