Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00256 ATGTCTTTGGAGTTGATGGCCTCCGAACGTATCTGTTATGTTTACTGCAACTTCTGCAACACTGTTTTGGCGGTAAGCGTTCCATGCAGTAGCATATTCAACATCGTGACAGTAAGATGTGGGCACTGCACCAATTTGCTGTCTGTGAATGTGGGAGCTTCCCTATTTCCTGCTCAAGACTCTCAGCAGCTAAGTCCTGGGGTTTCCAGCACAGACAGTGGTGGTTCTTCTTCCAAATCTACTAAAGTAGGAGCTTTTGAGTTTGTGGATCATGAACCACCTAGACTGCCTCCAGTTCGCCCTCCAGAGAAAAGACAGCGCCTTCCTTCTGCTTATAACAGGTTCATTAAAGAGGAGATCCAGAGGATTAAAGCTAGTAATCCAGACATAACCCACAGAGAAGCTTTTAGCACGGCAGCTAAAAATTGGGCACATTTTCCTCACATCCATTTTGGGTTGAAGACAACGGAGGGAAACAAGCATGCAAAGTTGGACAATTCATTGGCAGGCGAGGGGATCAATAAGAAGGCAAAGACTAACGGATTCTTCTAA 552 45.47 MSLELMASERICYVYCNFCNTVLAVSVPCSSIFNIVTVRCGHCTNLLSVNVGASLFPAQDSQQLSPGVSSTDSGGSSSKSTKVGAFEFVDHEPPRLPPVRPPEKRQRLPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGLKTTEGNKHAKLDNSLAGEGINKKAKTNGFF 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2247422 2251545 - Bma005716.1 Bma11g00256 90658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00256 183 SUPERFAMILY HMG-box 98 146 IPR036910 -
Bma11g00256 183 PANTHER PROTEIN YABBY 6-RELATED 6 175 IPR006780 GO:0007275
Bma11g00256 183 MobiDBLite consensus disorder prediction 61 80 - -
Bma11g00256 183 Gene3D High mobility group box domain 95 148 IPR036910 -
Bma11g00256 183 Pfam YABBY protein 7 153 IPR006780 GO:0007275
Bma11g00256 183 CDD HMG-box 107 143 - -
Bma11g00256 183 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00256 Bma-Chr11:2247422 Bma11g00817 Bma-Chr11:25431353 6.20E-61 dispersed
Bma11g00256 Bma-Chr11:2247422 Bma07g00218 Bma-Chr7:2604726 2.17E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58021 PF04690 YABBY 8.70E-67 CL0114 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00256 K25796 - zju:107410267 261.151