Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00292 ATGCGGCCAAAGCCTGAAAATGTAAATGGACTAGAACCTCCTCAACAGTCCATCCACCCAATTAGCAGTTATACTGAGCCGTGGTGGCGTAGTATGGGGTATAATCCTATCTCTGCCCCGATGACGATGACGGGGAAAAACGCTACTAATCCAAATCCATTGGAGTGCGCTGATGGTGTTTCAGAGTCCAATGATGATCAATCTATGTCAGATGATCTGGATGAAGAAGATGATGGTGTTTCCAAAGAAGCACATACTATTTCATCACCATCATCTGCTGCTAATTTCAGCCAAGAGCAACATAATCGTCGGCACGTCGCTCCAACCATGCCCACCATGCACAATGAACCTATCACACAACCTAGGCAACTCGAACCTATAGGTCACTCTATGACTTGGGCAGCAAATCCATATCAGGATTCATGTATGGGAGGAATTATGGCCACTTATGGGCACCAGCCTTTGTTTTATCCTCCTTTTCCCGGAATGCCACATGGTAGAATGCCTTTGCCTCTTGAGATGGCTCAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAGGGCATTATAAGGCGAAGACAAGCTCGTGCTAAAGCCGAGGTTGAAAAGAAGCTGGTAAAAGACAGAAAGCCCTACCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGGCCAAGAGGAAGTGGAGGGCGTTTCGTCAAGAAAAACAAGAATGATACTTTAAACTGCCCTGCTGAAGAAAGGGGCCTCAACTTACGAACTGGTGCTTGCTCAGGCGACAGACAGGTGGACAGAGACTGCAATCCCATGAATCCTTTGGCCGAGAGGTGGGTGTAA 837 47.07 MRPKPENVNGLEPPQQSIHPISSYTEPWWRSMGYNPISAPMTMTGKNATNPNPLECADGVSESNDDQSMSDDLDEEDDGVSKEAHTISSPSSAANFSQEQHNRRHVAPTMPTMHNEPITQPRQLEPIGHSMTWAANPYQDSCMGGIMATYGHQPLFYPPFPGMPHGRMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLVKDRKPYLHESRHQHAMRRPRGSGGRFVKKNKNDTLNCPAEERGLNLRTGACSGDRQVDRDCNPMNPLAERWV 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2745528 2748032 + Bma005755.1 Bma11g00292 90694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00292 278 MobiDBLite consensus disorder prediction 42 64 - -
Bma11g00292 278 MobiDBLite consensus disorder prediction 42 101 - -
Bma11g00292 278 MobiDBLite consensus disorder prediction 216 231 - -
Bma11g00292 278 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 177 232 IPR001289 GO:0003700|GO:0006355
Bma11g00292 278 PRINTS CCAAT-binding transcription factor subunit B signature 178 200 IPR001289 GO:0003700|GO:0006355
Bma11g00292 278 PRINTS CCAAT-binding transcription factor subunit B signature 209 232 IPR001289 GO:0003700|GO:0006355
Bma11g00292 278 Gene3D - 175 236 - -
Bma11g00292 278 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 241 IPR001289 GO:0003700|GO:0006355
Bma11g00292 278 ProSitePatterns NF-YA/HAP2 subunit signature. 180 200 IPR018362 GO:0003677|GO:0016602
Bma11g00292 278 MobiDBLite consensus disorder prediction 84 101 - -
Bma11g00292 278 MobiDBLite consensus disorder prediction 214 239 - -
Bma11g00292 278 MobiDBLite consensus disorder prediction 1 22 - -
Bma11g00292 278 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 241 - -
Bma11g00292 278 SMART cbf3 174 235 IPR001289 GO:0003700|GO:0006355
Bma11g00292 278 ProSiteProfiles NF-YA/HAP2 family profile. 175 235 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma11g00292 Bma14g00770 CCT
Bma07g01396 Bma11g00292 CCT
Bma11g00292 Bma14g00770 ECH
Bma07g01396 Bma11g00292 ECH
Bma07g00265 Bma11g00292 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00525 Bma-Chr4:4612504 Bma11g00292 Bma-Chr11:2745528 8.81E-25 dispersed
Bma04g01534 Bma-Chr4:51356042 Bma11g00292 Bma-Chr11:2745528 2.37E-23 dispersed
Bma07g01396 Bma-Chr7:49752772 Bma11g00292 Bma-Chr11:2745528 9.27E-80 dispersed
Bma11g00292 Bma-Chr11:2745528 Bma14g00770 Bma-Chr14:8563570 3.04E-71 dispersed
Bma06g00889 Bma-Chr6:43797581 Bma11g00292 Bma-Chr11:2745528 1.10E-30 transposed
Bma07g00447 Bma-Chr7:5437087 Bma11g00292 Bma-Chr11:2745528 9.09E-36 transposed
Bma11g00443 Bma-Chr11:5011590 Bma11g00292 Bma-Chr11:2745528 1.57E-35 transposed
Bma11g00292 Bma-Chr11:2745528 Bma07g00265 Bma-Chr7:3247422 4.59E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58024 PF02045 CBFB_NFYA 3.90E-27 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00292 K08064 - mnt:21398404 313.538