Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00292 | ATGCGGCCAAAGCCTGAAAATGTAAATGGACTAGAACCTCCTCAACAGTCCATCCACCCAATTAGCAGTTATACTGAGCCGTGGTGGCGTAGTATGGGGTATAATCCTATCTCTGCCCCGATGACGATGACGGGGAAAAACGCTACTAATCCAAATCCATTGGAGTGCGCTGATGGTGTTTCAGAGTCCAATGATGATCAATCTATGTCAGATGATCTGGATGAAGAAGATGATGGTGTTTCCAAAGAAGCACATACTATTTCATCACCATCATCTGCTGCTAATTTCAGCCAAGAGCAACATAATCGTCGGCACGTCGCTCCAACCATGCCCACCATGCACAATGAACCTATCACACAACCTAGGCAACTCGAACCTATAGGTCACTCTATGACTTGGGCAGCAAATCCATATCAGGATTCATGTATGGGAGGAATTATGGCCACTTATGGGCACCAGCCTTTGTTTTATCCTCCTTTTCCCGGAATGCCACATGGTAGAATGCCTTTGCCTCTTGAGATGGCTCAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAGGGCATTATAAGGCGAAGACAAGCTCGTGCTAAAGCCGAGGTTGAAAAGAAGCTGGTAAAAGACAGAAAGCCCTACCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGGCCAAGAGGAAGTGGAGGGCGTTTCGTCAAGAAAAACAAGAATGATACTTTAAACTGCCCTGCTGAAGAAAGGGGCCTCAACTTACGAACTGGTGCTTGCTCAGGCGACAGACAGGTGGACAGAGACTGCAATCCCATGAATCCTTTGGCCGAGAGGTGGGTGTAA | 837 | 47.07 | MRPKPENVNGLEPPQQSIHPISSYTEPWWRSMGYNPISAPMTMTGKNATNPNPLECADGVSESNDDQSMSDDLDEEDDGVSKEAHTISSPSSAANFSQEQHNRRHVAPTMPTMHNEPITQPRQLEPIGHSMTWAANPYQDSCMGGIMATYGHQPLFYPPFPGMPHGRMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLVKDRKPYLHESRHQHAMRRPRGSGGRFVKKNKNDTLNCPAEERGLNLRTGACSGDRQVDRDCNPMNPLAERWV | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2745528 | 2748032 | + | Bma005755.1 | Bma11g00292 | 90694 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00292 | 278 | MobiDBLite | consensus disorder prediction | 42 | 64 | - | - | |
Bma11g00292 | 278 | MobiDBLite | consensus disorder prediction | 42 | 101 | - | - | |
Bma11g00292 | 278 | MobiDBLite | consensus disorder prediction | 216 | 231 | - | - | |
Bma11g00292 | 278 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 177 | 232 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00292 | 278 | PRINTS | CCAAT-binding transcription factor subunit B signature | 178 | 200 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00292 | 278 | PRINTS | CCAAT-binding transcription factor subunit B signature | 209 | 232 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00292 | 278 | Gene3D | - | 175 | 236 | - | - | |
Bma11g00292 | 278 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 34 | 241 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00292 | 278 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 180 | 200 | IPR018362 | GO:0003677|GO:0016602 | |
Bma11g00292 | 278 | MobiDBLite | consensus disorder prediction | 84 | 101 | - | - | |
Bma11g00292 | 278 | MobiDBLite | consensus disorder prediction | 214 | 239 | - | - | |
Bma11g00292 | 278 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bma11g00292 | 278 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 34 | 241 | - | - | |
Bma11g00292 | 278 | SMART | cbf3 | 174 | 235 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00292 | 278 | ProSiteProfiles | NF-YA/HAP2 family profile. | 175 | 235 | IPR001289 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma11g00292 | Bma14g00770 | CCT | |
Bma07g01396 | Bma11g00292 | CCT | |
Bma11g00292 | Bma14g00770 | ECH | |
Bma07g01396 | Bma11g00292 | ECH | |
Bma07g00265 | Bma11g00292 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00525 | Bma-Chr4:4612504 | Bma11g00292 | Bma-Chr11:2745528 | 8.81E-25 | dispersed | |
Bma04g01534 | Bma-Chr4:51356042 | Bma11g00292 | Bma-Chr11:2745528 | 2.37E-23 | dispersed | |
Bma07g01396 | Bma-Chr7:49752772 | Bma11g00292 | Bma-Chr11:2745528 | 9.27E-80 | dispersed | |
Bma11g00292 | Bma-Chr11:2745528 | Bma14g00770 | Bma-Chr14:8563570 | 3.04E-71 | dispersed | |
Bma06g00889 | Bma-Chr6:43797581 | Bma11g00292 | Bma-Chr11:2745528 | 1.10E-30 | transposed | |
Bma07g00447 | Bma-Chr7:5437087 | Bma11g00292 | Bma-Chr11:2745528 | 9.09E-36 | transposed | |
Bma11g00443 | Bma-Chr11:5011590 | Bma11g00292 | Bma-Chr11:2745528 | 1.57E-35 | transposed | |
Bma11g00292 | Bma-Chr11:2745528 | Bma07g00265 | Bma-Chr7:3247422 | 4.59E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58024 | PF02045 | CBFB_NFYA | 3.90E-27 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00292 | K08064 | - | mnt:21398404 | 313.538 |