Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00303 | ATGTGGTCTGCTCCCTCCAGACAAATCAATTACGGCCTCTCATCGGAGATGGGCATGGTGGGTCTACGCGATGTCTTTGTTGTAGCACCCGCCTCCTCCTTCAACCCCAACAATCATATTCATCACCCGCACGAACCCATCATTTCCGATCATCATTCCATCAACGGGTCGAACCCAACGACTGCCCTCGGCGTCGGCGTTATTCCTCTCCTTACTGCGGCTCACCTCACTCCGCCTAGCCTCGTCGGTGAAGATCAAGATAGTTTAGTGAGTAGAAGCCGAGGTGGTGGAGTTCAACTATGGCAGAATCAGCAATCAAACCATGTTAATTACCTGAAGAAACAAGCTCTTCTCGATCATAATAATTCTGCAAATTTAGTCCTGAGCGGAGGTGGTAACAATGGAGGAGTTGTTGTTTCTGGGTCTACTCCTTCATCAACATTGACTTGCCAAGACTGCGGAAATCAAGCCAAGAAAGATTGCAGCCATAGGCGTTGCAGGACTTGCTGCAAAAGCCGAGGTTTTGATTGCGCAACACATGTTAAAAGTACTTGGGTGCCGGCTTCTCGCCGGAGAGAGCGGCAAACAATGACCATCGGTGCTGCTCCGGCCGCTGGGTCTTCCGCATCGACCTCCGGCTCCAAGAAACCGAAACTAATCACCTCTCAAACAACAACCACCTCGCACACTTCTACTTCTAACACAACTCCTAGAAGCTTTGACACAAGCTCTAGCCATCAAGATATGGGTTTCAAAGAGTCATTTCCTGGACAAGTCCGCGCGCCGGCAGTTTTCAAGTGCGTTAGAGTGACGGCAGTGGAAGATGGAGAAGATGAGTACGCCTACCAAACTGTTGTGAGAATCGGAGGTCATGTTTTCAAAGGGTTTTTGTATGATCAGGGGGTTGAATCAAGAGAGGGGTTCCCTAATATGTCCGACCCACTTTTAGGCAGTGGAAGTGGCGCTGCTCCAAGCGACGCCATAGATTCCGGCAATGGCGACGGAGGAAGAAATAGAGCCACATCTCCAATTCTTAACCATCCGTTAGACGTTTATGCAGCTTCAAGCGGAGGACTGCTCGGAGGTTCCAGCTATGGTAATCCTATGAACTGA | 1113 | 49.87 | MWSAPSRQINYGLSSEMGMVGLRDVFVVAPASSFNPNNHIHHPHEPIISDHHSINGSNPTTALGVGVIPLLTAAHLTPPSLVGEDQDSLVSRSRGGGVQLWQNQQSNHVNYLKKQALLDHNNSANLVLSGGGNNGGVVVSGSTPSSTLTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQTMTIGAAPAAGSSASTSGSKKPKLITSQTTTTSHTSTSNTTPRSFDTSSSHQDMGFKESFPGQVRAPAVFKCVRVTAVEDGEDEYAYQTVVRIGGHVFKGFLYDQGVESREGFPNMSDPLLGSGSGAAPSDAIDSGNGDGGRNRATSPILNHPLDVYAASSGGLLGGSSYGNPMN | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2862855 | 2864082 | + | Bma005765.1 | Bma11g00303 | 90705 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00303 | 370 | MobiDBLite | consensus disorder prediction | 308 | 343 | - | - | |
Bma11g00303 | 370 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 17 | 370 | IPR007818 | GO:0003700|GO:0006355 | |
Bma11g00303 | 370 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 255 | 302 | IPR006511 | - | |
Bma11g00303 | 370 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 17 | 370 | - | - | |
Bma11g00303 | 370 | MobiDBLite | consensus disorder prediction | 199 | 254 | - | - | |
Bma11g00303 | 370 | Pfam | Domain of unknown function (DUF702) | 147 | 303 | - | - | |
Bma11g00303 | 370 | MobiDBLite | consensus disorder prediction | 201 | 251 | - | - | |
Bma11g00303 | 370 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 149 | 191 | IPR006510 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma11g00303 | Bma14g00754 | CCT | |
Bma07g01484 | Bma11g00303 | CCT | |
Bma07g00281 | Bma11g00303 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00436 | Bma-Chr3:3341899 | Bma11g00303 | Bma-Chr11:2862855 | 1.62E-51 | dispersed | |
Bma11g00303 | Bma-Chr11:2862855 | Bma14g00754 | Bma-Chr14:8388277 | 3.55E-137 | dispersed | |
Bma11g00303 | Bma-Chr11:2862855 | Bma07g00281 | Bma-Chr7:3479871 | 3.41E-165 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58027 | PF05142 | DUF702 | 2.40E-62 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00303 | - | - | vri:117916582 | 462.611 |