Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00322 ATGGAAGCTCGTTTCTCTGTGCTGCTACTGATCGTTCTGTTTCATCTTCTAGCTCTAACCCTCGTTTCATCTTCCCCAGTTCAAGACACTGAATCTGTTGTTCAAGAAGTTCTTACGAGAATCAACAATGCCACCATTAGCAGAAGAAACCTGGGTTATCTCTCGTGTGGTACGGGAAACCCCATTGACGACTGCTGGAGGTGCGACCCCAAGTGGGAGACTAACCGGCAGCGCCTTGCAGACTGCGCTATCGGGTTTGGCAAGCGAGCCATCGGCGGCCGTGACGGGAAAATTTACGTCGTTACTGATCCGACTGATAAAGACGTCGTGAATCCTAAACTGGGTACTCTCCGTCACGCCGTCATCCAAGACGAACCCCTTTGGATCATCTTCAGCCGGGATATGGTCATCAAGCTAAGAGAAGAGCTCATCATGAACTCCTTCAAGACAATCGATGGCCGCGGCGTCAGCGTCCACGTCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACCAACATCATAATTCACGGCGTCCACATTCACGATTGCAAGGTCGGAGGAAACGCCTACGTGAGAGACTCGCCGGACCATTACGGGTGGCGGACGAGGTCGGACGGAGATGGGGTTTCGATCTTCGGAGGAAGCCATATTTGGGTGGACCATTGCACTCTGTCAAACTGCAATGATGGTCTGATAGACGCCATTCATGGATCTACAGCCATCACCATATCCAACAATTATATGACTCACCATGACAAAGTCATGCTTTTGGGCCATAGCGATTCCTACTCACCAGACAAGAACATGCAAGTGACCATAGCTTTCAACCATTTCGGAGAAGGACTAGTCCAGAGAATTCCCAGGTGTAGGCATGGGTATTTCCATGTGGTGAATAATGACTATACGCATTGGGAGATGTACGCGCTTGGAGGTAGTGCGGCTCCGACAATCAACAGCCAAGGCAACAGATTTCTAGCGCCAAACGACGCCGACAACAAAGAGGTGACGAAGCACGAGGACGCAGCAGAGAAAGAATGGAGAAAGTGGAATTGGAGGTCGGAGGGAGATTTGATGCTAAACGGAGCGTCTTTCACGAGATCTGGAGCAAGCGCATCCTCCAGCTACGCTAAGGCGTCGAGTCTGAGCGCAAGGCCGTCGGCGCTCGTCAGTTCACTCACCGGCGGCGCCGGCGCTCTTAGTTGCAAGAAGGGTTCTCGCTGCTGA 1227 52.08 MEARFSVLLLIVLFHLLALTLVSSSPVQDTESVVQEVLTRINNATISRRNLGYLSCGTGNPIDDCWRCDPKWETNRQRLADCAIGFGKRAIGGRDGKIYVVTDPTDKDVVNPKLGTLRHAVIQDEPLWIIFSRDMVIKLREELIMNSFKTIDGRGVSVHVAGGPCITIQYVTNIIIHGVHIHDCKVGGNAYVRDSPDHYGWRTRSDGDGVSIFGGSHIWVDHCTLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYSPDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYALGGSAAPTINSQGNRFLAPNDADNKEVTKHEDAAEKEWRKWNWRSEGDLMLNGASFTRSGASASSSYAKASSLSARPSALVSSLTGGAGALSCKKGSRC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3033648 3035087 - Bma005783.1 Bma11g00322 90724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00322 408 SMART amb_all 134 331 IPR002022 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Bma11g00322 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Bma11g00322 408 PANTHER PECTATE LYASE 10 405 - -
Bma11g00322 408 Gene3D - 59 401 IPR012334 -
Bma11g00322 408 Pfam Pectate lyase 145 325 IPR002022 -
Bma11g00322 408 PANTHER PECTATE LYASE 18-RELATED 10 405 IPR045032 GO:0030570
Bma11g00322 408 SUPERFAMILY Pectin lyase-like 48 402 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00759 Bma-Chr3:6924428 Bma11g00322 Bma-Chr11:3033648 0 dispersed
Bma06g00238 Bma-Chr6:3163295 Bma11g00322 Bma-Chr11:3033648 0 dispersed
Bma11g00322 Bma-Chr11:3033648 Bma13g00568 Bma-Chr13:12104081 0 dispersed
Bma11g00322 Bma-Chr11:3033648 Bma07g00295 Bma-Chr7:3681275 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00322 K01728 - tcc:18609637 692.189