Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00338 ATGAGAGAGATCATTAGCATTCATATTGGTCAGGCAGGGATACAGGTTGGGAACTCATGCTGGGAGCTCTATTGCCTCGAACATGGCATCCATCCTGATGGCATAATGCCTAGCGACACTTCTGTGGGTGTAGCAAAAGATGCTTTCAACACCTTTTTTAGTGAGACTGGTTCAGGAAAACACGTGCCAAGGGCTATATTTGTTGATTTAGAGCCGACTGTTATTGATGAAATAAGAACTGGATCATACCGGCAACTCTTTCATCCTGAGCAACTGATTTCTGGTAAAGAAGATGCTGCTAATAATTTTGCAAGAGGTCACTATACAGTTGGGAAGGAAATTGTAGACCTATGCCTTGACCGAGTCCGAAAATTGGCAGATAACTGCACTGGGTTGCAAGGATTTCTAGTGTTTAACGCAGTTGGCGGTGGGACTGGTTCTGGTTTGGGTGTTTCAACAGCGGTTGTGGAGCCTTACAACAGTGTTCTTTCAACTCATTCCCTTCTTGAACATACTGATGTCGCAGTCCTTCTCGACAATGAAGCTATCTATGACATTTGCAGAAGGTCATTGGATATTGAGAGGCCTACTTACACCAACTTGAATAGATTGATATCGCAAATCATTTCATCCTTGACGACTTCACTGAGGTTTGATGGAGCCATCAATGTGGATATCACAGAGTTTCAGACAAACCTTGTGCCATATCCTCGAATTCATTTTATGCTCTCCTCTTATGCTCCCGTAATTTCTGCTGAAAAAGCATACCATGAACAGCTATCAGTTCCTGAAATCACAAACGCTGTTTTCGAACCCTCAAGCATGATGGCTAAGTGCGATCCTAGGCATGGGAAATATATGGCCTGCTGCTTGATGTATCGGGGAGATGTTGTTCCGAAGGATGTAAATGCTGCTGTTGGCACCATCAAAACGAAAAGAACTGTCCAGTTTGTGGACTGTGATCATTGGAAGAAAAACATTTCTATCCTGGCAAGATGTCATAAAGTTTACTCTCTTGATCTTATTGGTTATGGATACTCTGACAAACCAGATCCAGAAAAAGTTGGAAAGAACTTTTATTCATTTGAGACTTGGGCCGCCCAAATAAATGATTTTGTTGCTGACGTTGTTAAGGATGATGCATTTTTCGTATGTAATTCCATAGGAGGAGTTGTTGGTCTTCAGGCAGCTGTGATGGAGCCACAGATCTGCAAGGGTATTGTCCTTTTAAATATATCTCTTCGCATGCTTCATATCAAGAAGCAACCTTGGTATGGAAGACCATTGATCAGGTCATTTCAGAACTTGCTAAGAAATACAGCTATGGGCGAATATTTTTTTAGATTGGTTGCGACTCCGGAATCTGTGAAAAGAATTCTTTGTCAGTGTTACCACGACTCCTCCCAGGTGACAGACGAATTGGTGCAGATGATTCTTAGACCGGGACTGGAACCCGGTGCTGCCGGCGTGTTTTTGGAATTCATATGTTACTCGGGCGGGCCTCTTCCAGAAGAATTACTGCCTCTGGTGAAGTGTCCTGTTCTGATAGCTTGGGGTGACAAAGACCCATGGGAACCCATTGAGCTTGGAGCAAGTTTTAGAAACTTTGATTCTGTTGAAGACTTTGTCGTCATCCCTAATGATGAAGCTCCGCATCTGGTGAACCCACTGGTGGAGTCATTTGTATCACGCCATACTGCACCAACACCTATCTGA 1716 43.41 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGIMPSDTSVGVAKDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEIRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDCDHWKKNISILARCHKVYSLDLIGYGYSDKPDPEKVGKNFYSFETWAAQINDFVADVVKDDAFFVCNSIGGVVGLQAAVMEPQICKGIVLLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAMGEYFFRLVATPESVKRILCQCYHDSSQVTDELVQMILRPGLEPGAAGVFLEFICYSGGPLPEELLPLVKCPVLIAWGDKDPWEPIELGASFRNFDSVEDFVVIPNDEAPHLVNPLVESFVSRHTAPTPI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3322934 3334427 - Bma005795.5 Bma11g00338 90740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00338 571 CDD alpha_tubulin 2 319 - -
Bma11g00338 571 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Bma11g00338 571 PRINTS Alpha/beta hydrolase fold signature 383 396 IPR000073 -
Bma11g00338 571 PRINTS Alpha/beta hydrolase fold signature 514 528 IPR000073 -
Bma11g00338 571 PRINTS Alpha/beta hydrolase fold signature 333 348 IPR000073 -
Bma11g00338 571 SMART Tubulin_4 49 220 IPR003008 GO:0005525
Bma11g00338 571 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 PANTHER TUBULIN ALPHA CHAIN 1 150 - -
Bma11g00338 571 Pfam Tubulin/FtsZ family, GTPase domain 3 150 IPR003008 GO:0005525
Bma11g00338 571 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Alpha-tubulin signature 295 316 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma11g00338 571 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma11g00338 571 PANTHER TUBULIN 151 320 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 Pfam Alpha/beta hydrolase family 332 547 IPR000073 -
Bma11g00338 571 Gene3D Tubulin/FtsZ, GTPase domain 1 151 IPR036525 -
Bma11g00338 571 PANTHER TUBULIN 1 150 IPR000217 GO:0005874|GO:0007017
Bma11g00338 571 Pfam Tubulin C-terminal domain 237 319 IPR018316 -
Bma11g00338 571 Gene3D - 240 336 IPR037103 -
Bma11g00338 571 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bma11g00338 571 Gene3D Tubulin/FtsZ, GTPase domain 152 239 IPR036525 -
Bma11g00338 571 PANTHER TUBULIN ALPHA CHAIN 151 320 - -
Bma11g00338 571 SUPERFAMILY alpha/beta-Hydrolases 319 562 IPR029058 -
Bma11g00338 571 SUPERFAMILY Tubulin C-terminal domain-like 220 320 IPR008280 -
Bma11g00338 571 SMART Tubulin_C_4 222 335 IPR018316 -
Bma11g00338 571 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 218 IPR036525 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g01423 Bma11g00338 CCT
Bma11g00338 Bma14g00379 CCT
Bma07g00310 Bma11g00338 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00338 Bma-Chr11:3322934 Bma12g00302 Bma-Chr12:4252155 0 dispersed
Bma04g00347 Bma-Chr4:2818265 Bma11g00338 Bma-Chr11:3322934 6.73E-20 transposed
Bma11g00338 Bma-Chr11:3322934 Bma07g00310 Bma-Chr7:3755446 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00338 K07374 - ncol:116255814 606.29