Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00345 ATGGCTGCAAGGTACTGGTGCCACAGATGTTCTCAGATCGTCATTCCAGTCCTAGAAGCCGAGATAAAATGTCCCGTTTGCGAAGGTGGCTTTGTGGAAGAGATAAGTAGCAGCAGCATCAGGGAAACCAATGACCATCCGGAGTCTGATTTTGGATCTGAACGAGCCCTATCCTTGTGGGCACCAATCTTTCTCGGCATGATGAATAATCCACGCCATCGCCGCCGCAGAGTTAGGCAATTACCAGTGGATGCGGATGACCATGTGAGTGATCACGATGATGATGATTATGGTATTGATGGACGCAATGCAGCTTGGACAAGTGAATTAACCACAGAATTAGAGTCCACGATCAGGAGGAGGAGAAGTTCAGCATCTATTCTACAAATGCTTCATGGCATGCTAGATGGAATGACATCCAGATTAGAGAACATAGAGAGCGAATTGAATACTGGAAGAGAGGGATATGCTGTCCGCAATGAAACACAAACTGGATCTCTAGGTGATTATTTCGTTGGACCTGGTTTGGATTTGTTATTGCAACATTTAGCAGAGAATGATCCCAATAGATATGGAACTCCACCGGCACAAAAGGAAGCCGTAGCTGCACTGCCCACAGTTATAATCAAGGAGGACTTGAAGTGTTGTGTTTGTTTGGATGATTTTGAGAGAGGGATTGAAGTGAAGGAGATGCCTTGTAAGCATAAGTTTCACTCTGGATGTATAATGCCGTGGTTGGATCTTCATAGTTCTTGTCCAGTTTGTAGGTATCAGTTGCCAGCTGAGGAAATAAAGCATGGAGGGCAAAGGGAAAGTGAGAGTGAGAGTTACAGAGCTAATTCCCAAAGACGTTCTGGTGAAGAAGAGTCGAACCGTAATGGGAGAGTTTCACCTGGTAGAAGATTTTCCTTTCCATGGTCATTCACTGGTTTATTTTCTTCATCTGGGTCTCAATCTAGTAGTGGAAATGGAAGTAGAGCTGCAAGTGGTTCTCAATCAGATGACAACTAG 1011 44.61 MAARYWCHRCSQIVIPVLEAEIKCPVCEGGFVEEISSSSIRETNDHPESDFGSERALSLWAPIFLGMMNNPRHRRRRVRQLPVDADDHVSDHDDDDYGIDGRNAAWTSELTTELESTIRRRRSSASILQMLHGMLDGMTSRLENIESELNTGREGYAVRNETQTGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVAALPTVIIKEDLKCCVCLDDFERGIEVKEMPCKHKFHSGCIMPWLDLHSSCPVCRYQLPAEEIKHGGQRESESESYRANSQRRSGEEESNRNGRVSPGRRFSFPWSFTGLFSSSGSQSSSGNGSRAASGSQSDDN 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3389968 3390978 - Bma005802.1 Bma11g00345 90747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00345 336 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Bma11g00345 336 SUPERFAMILY RING/U-box 203 260 - -
Bma11g00345 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 262 IPR013083 -
Bma11g00345 336 SMART ring_2 215 255 IPR001841 -
Bma11g00345 336 Pfam Ring finger domain 214 256 IPR001841 -
Bma11g00345 336 MobiDBLite consensus disorder prediction 264 301 - -
Bma11g00345 336 MobiDBLite consensus disorder prediction 264 295 - -
Bma11g00345 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 313 - -
Bma11g00345 336 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 313 - -
Bma11g00345 336 MobiDBLite consensus disorder prediction 313 336 - -
Bma11g00345 336 CDD RING-H2_RNF181 214 259 - -
Bma11g00345 336 Pfam zinc-ribbon 4 35 IPR039525 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00345 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - tcc:18589132 340.502
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00317 Bma11g00345 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00345 Bma-Chr11:3389968 Bma12g01260 Bma-Chr12:45646726 8.02E-47 dispersed
Bma01g00903 Bma-Chr1:8725143 Bma11g00345 Bma-Chr11:3389968 2.86E-21 transposed
Bma03g00747 Bma-Chr3:6838900 Bma11g00345 Bma-Chr11:3389968 2.98E-14 transposed
Bma11g00345 Bma-Chr11:3389968 Bma07g00317 Bma-Chr7:3806447 2.57E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38