Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00374 AAAAACTCTGCCAAAATGAACGATCTCTTCTCCGGCTCGTTCAAAAAGTATGCAGACCTGAAGCAGCAGGCCTACCTAGACGGCATGGAGGCCGGCAAGGAGAGCATAAATCTTGACAAGTTCTTTGAAGACATCGACAATGTGAAGGAAGACATGAAACAAGTGGAAAAGCTCTACAAGAAACTGCAGGAAGCAAATGAGGAATGCAAAGTTGTCCACAATGCCAAAACCATGAAAGAACTGAGAGCAAGAATGGATCAAGATGCCAGCCAGGTTTTAAAAAGAGTCAAAATGATCAAAGCAAAGCTCGAAGGCCTCGATCGATCAAACGCAGCCCATCGAAGCCTTCCGGGGTGCGGCCCGGGCTCATCTGCCGACAGAACAAGAACCTCGGTCGTAAGTGGATTGGGGAAGAAACTAAAAGACATAATGGATGATTTTCAGAGTTTAAGAAGTAGAATGAATGCAGAATATAAGGAAACAGTTGAACGCAGGTATTTCACAATCACAGGAGAGAAGGCAAATGAAGAAACCATTGAAAATCTAATCTCGAGTGGAGAAAGCGAAAATTTTCTGCAGAAAGCAATTCAAGAACAAGGCAGAGGCCAAATAATGGACACCATATCAGAAATACAAGAAAGACACGATGCAGTGAAGGAGATCGAGAAGAACCTCATTGAGCTTCACCAGATATTTCTGGACATGGCTGCTCTGGTCGAGGCCCAGGGACATCAACTCAACGACATAGAGAGTCACGTTGCCCATGCAAATTCGTTCGTCAGGCGAGGGACAGAGCAGCTTCAAGAGGCCAGAGAAAGTCAGAAAAGCTCGAGGAAATGGACCTGCATTGCCATAGTTCTTGGTGCAGTTCTTGTTGCTGTTCTTCTCTTCCCACTTCTATCATCCATTTTGCCTCACCTGTTGTAG 927 45.2 KNSAKMNDLFSGSFKKYADLKQQAYLDGMEAGKESINLDKFFEDIDNVKEDMKQVEKLYKKLQEANEECKVVHNAKTMKELRARMDQDASQVLKRVKMIKAKLEGLDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDIMDDFQSLRSRMNAEYKETVERRYFTITGEKANEETIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARESQKSSRKWTCIAIVLGAVLVAVLLFPLLSSILPHLL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4077034 4077960 + Bma005833.3 Bma11g00374 90776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00374 308 CDD SynN 38 195 IPR006011 GO:0016020
Bma11g00374 308 Pfam SNARE domain 245 296 IPR000727 -
Bma11g00374 308 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma11g00374 308 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Bma11g00374 308 SMART tSNARE_6 203 270 IPR000727 -
Bma11g00374 308 Gene3D - 197 300 - -
Bma11g00374 308 MobiDBLite consensus disorder prediction 112 131 - -
Bma11g00374 308 SMART SynN_4 33 159 IPR006011 GO:0016020
Bma11g00374 308 CDD SNARE_syntaxin1-like 207 269 - -
Bma11g00374 308 Coils Coil 38 75 - -
Bma11g00374 308 PANTHER T-SNARE-RELATED 12 300 - -
Bma11g00374 308 PANTHER SYNTAXIN 12 300 IPR045242 -
Bma11g00374 308 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Bma11g00374 308 Gene3D - 38 165 - -
Bma11g00374 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00004 Bma-Chr10:154588 Bma11g00374 Bma-Chr11:4077034 2.96E-93 dispersed
Bma10g00132 Bma-Chr10:1190775 Bma11g00374 Bma-Chr11:4077034 3.14E-125 dispersed
Bma11g00374 Bma-Chr11:4077034 Bma12g00507 Bma-Chr12:16198148 7.91E-66 dispersed
Bma12g00235 Bma-Chr12:3044573 Bma11g00374 Bma-Chr11:4077034 2.49E-10 dispersed
Bma11g00374 Bma-Chr11:4077034 Bma07g00353 Bma-Chr7:4463222 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00374 K08486 - csv:101217140 527.709