Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00414 ATGGCGCCGAGGGAGAAGGTGGGTGGCACGAAGGGTAACGGAAGCGTAAAGGAAGTGCATTTCAGAGGAGTGAGGAAGAGACCGTGGGGGAGATACGCCGCCGAAATTAGAGATCCCGGCAAAAAGAGCCGCGTTTGGCTGGGGACGTTTGATACGGCGGAAGAGGCTGCTCGAGCATACGACGCTGCTGCTATAGAGTTTCGGGGAGCCAAAGCCAAAACTAACTTTCCCTTTCTCGTCGACGGTGTGACCACCAAAAACAATCCAAATCGGAGCCCTAGCCAGAGTAGCACTGTCGAGTCGTCCAGCCACGACCCGCCTCTTTCGCTTGATTCTCGGCAGTTGAATCTCAACCTCCCTTGCGATGGATTTCAACCAGCCGGAGGTATGAGGCTTCCCTTCGACCGCCGCCTAATCCCTTCACTTGGTGTAGCTTTCCCCGGCGGTGTCTCGGCCGCCAATCAAATTGTGTACTTTGATGCAGCTGTTAGCGCCGGGATGATGAAGAGTCATCAGTGCCAAAGGCTGAGATTTGTTCAGCCTGACAGATCGAAGAGTGACTCTGACTCATCCTCCGTCGTGGATATGAACCACCATGAACTGAAGCCACGGAAGCTCCCCGATCTCGATCTCAACTTTCCTCCACCAAACGACGCTTAG 660 54.55 MAPREKVGGTKGNGSVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAIEFRGAKAKTNFPFLVDGVTTKNNPNRSPSQSSTVESSSHDPPLSLDSRQLNLNLPCDGFQPAGGMRLPFDRRLIPSLGVAFPGGVSAANQIVYFDAAVSAGMMKSHQCQRLRFVQPDRSKSDSDSSSVVDMNHHELKPRKLPDLDLNFPPPNDA 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4454815 4455474 - Bma005870.1 Bma11g00414 90816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00414 219 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Bma11g00414 219 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Bma11g00414 219 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Bma11g00414 219 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Bma11g00414 219 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Bma11g00414 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 209 - -
Bma11g00414 219 MobiDBLite consensus disorder prediction 180 219 - -
Bma11g00414 219 MobiDBLite consensus disorder prediction 83 112 - -
Bma11g00414 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 209 - -
Bma11g00414 219 MobiDBLite consensus disorder prediction 180 207 - -
Bma11g00414 219 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Bma11g00414 219 MobiDBLite consensus disorder prediction 1 21 - -
Bma11g00414 219 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Bma11g00414 219 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma11g00414 Bma14g01008 CCT
Bma01g00559 Bma11g00414 CCT
Bma11g00414 Bma14g01008 ECH
Bma01g00559 Bma11g00414 ECH
Bma07g00389 Bma11g00414 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00414 Bma-Chr11:4454815 Bma14g00253 Bma-Chr14:3005869 1.16E-44 dispersed
Bma11g00414 Bma-Chr11:4454815 Bma07g00389 Bma-Chr7:4768949 1.19E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58035 PF00847 AP2 1.30E-15 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00414 K09286 - jre:108983254 213.386