Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00420 ATGGAGGGTGAGGCTTCGGATGAAGAAAATCGGAATCTTGACGATCGCGATAATAATAAGACTAGCAACTCGAATGAAGGTATGGGCAAGCCTAAGCGGCAGATGAAGACTCCGTTTCAGCTTGAAACTCTTGAGAAGGCCTATGCCATGGAAACTTATCCAGGCGAGTGCAGTCGCATAGAACTGTCAAAGAAATTAGGGTTGACGGATAGGCAATTGCAGATGTGGTTTTGTCATAGAAGGTTGAAGGACAAGAAGGAAGCACCTGCTAAAAAAAATGTGAAGATGGTGCCAGCAGCTCTGCCGGATTCTCCTAGTGATGATTTGAGAATGGGGGCTGATCCAGGTAGTGATTATGGGTCTGGGTCAGGTTCTAGTCCGTTTGGTCACACGAACGTACGCAATGCAATGCCTTGGAGTGGTGGAGATGATATTCGAACGATGAGAAAGATTCGTGAGCCTTCTCAGTCTTTAATGGAGCTCAGAGCTATTGCCTGTGTAGAAGCACAGTTAGGGGAGCCACTGAAGGGAGATGGGCCAATTCTTGGAATAGAATTTGATTCTTTACCTCCTGATGCATTTGGAGCATCTATAGAAGTAGCGACGGAGCAACTGAAAAGGTCTGGGAATCGTTATGATGGAAGAACATATGAACGAAGAGATTCAAAGTCAAATAAAGCTACTCCAAGAACTTTTCATGACTTTTCCTATCTTCAAGATGTGTCCAGTATAAGAACTGATATATATGGACAAATTACACAATCGCATTATGCTGATTCTGTAGTCGAAGTGCCATCTGCCAGGACATCATCGTTCTTGCATGGTAATGAACAGTCAACAAGGACCCATGGTTTTCATGGTTATCTTCCACGTGCTCGTCTATTGTCTCAAAAAGATAAGGAAGGGATTGCAATCCCATCACCTTCTGGAGATGATGACTTTATTCCTCCAAGGAGTTCTTACACAAACAACAGAATAAATAATCAGTTAACTGATCATCCAGCAATTGGACCAGAAAATCCATATTTATCATCTGATGGACGCAGTTTTCAAAATGATGATATTCTATGGATGGAAAGGAAACATAAGAGTGGAGCAAAAATATCTAAAGATGGTGAAGCTCATGAGATACGAATCCGGAAAGAACTGGAGAAACAAGACGCTCTGAGGAAAAAGGGTGAAGAACGAATAAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGGAAAAAGGAGGAAGAAAAGTTACTGCGTGAAAGACAACGGGAAGTAGAGAGATTAAAGCGTGAGAAAATAAGGGAGAATGAACGCAGGGAAAGGTTTCTGGAGAAAGAAAATATGAGAGCCGAGAAAAGGAAGCAAAAGGAAGAACTTCGCAAGGAAAGAGAGGAAGTAAGACGCCAAGCTGCAGTTGAAAAGGCCAATGCACGTAGAATCGCTAGAGAATCTATGGAGCTAATTGAGGATGAACAACTGGAGCTGATGGAACTGGCTGTTTCAAGGAAAGGATTATTGTCCATAGCAAATCTTGATTATGACACCTTGCAAAATCTTGATTCATTCAGAGGTAGGACTGCATTGCTATCCGCTATTGGTTCAGATTTTATGGGTTCCTTTCCACCAAAGACTGTGCATCTGAAAAGACCGTTTGGAGTGAAACCCTGGACCATATCAGAGGAGAATATTGGAAACCTTCTTATGGTTTGGAGATTTTTAATTACATTTGCGGACATTCTAGAATTGTGGCCTTTTACTCTCGATGAGTTTGTTCAAGCCTTTCATGACTATGATTCCAGATTGTTGGGAGAAATTCATATTTCTCTCCTGAGGTTGATTATTAAAGACATTGAAGATGTTGCAAGGATGCCTTCAACTGGATTGGGGATGAATCAAAATGGTGTTGTCAATCCTGGAGGTGGACATCCACAGATTGTTGAAGGGGCCTATGGGTGGGGCTTTGACATTTGCAAATGGCAGAGACATTTAAATCCTTTAACATGGCCAGAAATATTTCGACAGTTGGCACTTTCTGCCGGATTTGGACCCCAGTTAAAGAAAAGGAGTATAAAATGGTCAGATGTGCGTGATAACAATGAGAGTAAAGGTTGTGAAGATGTGGTTTCTACTCTACGCAATGGTTCAGCAGCAGAAAACGCTTTTGCGTTGATGCAAGAGAGAGGATTGTTAGCTCCGCGGAAATCCAGACATCGTTTGACTCCTGGAACTGTCAAATTTGCCGCTTTTCATGTTCTATCATTGGAGGGAAGCAAAGGACTTACAGTAGTAGACCTTGCTGACAAGATTCAGAAATCTGCACTTAGAGATCTATCAACAAGCAAAACACCGGAGGCATCTATATCAGTTGCCTTGACAAGGGATACTAAGCTTTTTGAGAGAATAGCTCCATCAACTTATCGAGTGAGAGCTCCCTACAGAAAGGATCCTATTGATTCTGAGGAGATACTGTCATCTGCTAGGAAGAAAATTCAGATATTTCAAAATGGGTTTTTACCTTGCGAAGATGTAGAACGTGATGAAGAATCTGAATGCGACGATATTGATGAGGACCCTGAAGTTGACGATTTAGGTACTCCTACCTTAGAAAATAAAAATGCTGATAAGAGAAATGAAGAAGAATCTTCCGTAGGAAATGGGAAAGAAACTTTATGCCCAGATGTATTATCAACTCCACAAAATGAGTTTGACAAGGATATGACCACCTTCCCATTTAGTGTTTCTAACGATGCAAAATATTCAGTTTCTGATGCAAAGCAATATAGTTGTGTTCCTGAAATTACTAATCTTGATCAAGAAAATATGGAGATTGATGAAAGCAAGGCTGTCTTGAATTTATTGTCAATAATTATACAGGATCGTCTGGAGGCTGCAAATGCACTTAAAAAGCAAATGTGGGCAGAGGCACAGGTTGATAAAAGTCGCCCGAAAGACGAGCTTGTACCTAAATCTGATTTTCCATCTATCATGGGGATCAAAGCGGAAGCACAACATTGTTCTACGCTAGATGGTGGCCAAAGCCCATTTCCTGATGTTGACAATAGGAGTAATCAAGTATCTCCTAGTAATGCTGAGAACCAAAAATCACTAAATGGTTTTCGAACAGATCAAGATCTTCTTAACTGTTCACGTGATGAAAAGGGCTCTGTGCCACAAGATTTTTCAGTCAGTCAAGATAATTTGTTGCAGCAGATTGGCAATGCAACAAAAAAGTCACGGTCACAGTTAAAATCTTATCTTGGCTTCAGAGCAGAAGAGATGTACACATATAGATCATTACCCCTTGGCCGTGATCGCAAGCGCAATCGATATTGGCAATTTGTTGCATCTGCTTCGAGTAATGACCCTGGTTCTGGTAGGATCTTTGTTGAATTACATGATGGTCATTGGAGGCTTATTGACTCAGAAGAGGCTTTTGATTCTCTTTTGATCTCCTTGGACACACGTGGGATTAGAGAATCAAATTTGCGCTTAATGTTGCAAAACATTGAGACATTCTTCAAGGAAAATGTCAGAAGGTCCGTTCAGCTAAATAATCTGGTGGTTGCTAGTGGAACTTGTGTGAAAAGTTGTGCTGATGAAATGGAATGTAGTCCTACCCCTCCTGCTGCTTTGGACAGTCCAAGCAGTGCTGTTTGTGGCTTGAATTTAGATATGATGGTAACCTCATCTTCATTCAAAATTGACCTTGACCTTGGGAGAAATGAAACTGAGAAGCAAGCTGCCTTGAAAAGGTATCAAGAATTTCAGAGGTGGGCATGGGGTGAATGCTTAAATACATTATCTGCTATGAAGTACGGAAAGACGAGATGCAAGCAGCTGTTAGACAATTGCGAGCCATGTCTTAGCTCATATAACTCCGAACATTCCCATTGCCTTTCTTGCCATCAAACTTTTGACAGCAATGACTTGAATTTCTCTGATCACCTAATTTATTGTGAAGAAAGTAGAAAGCTTAAGCATGGGGAAATGCGTGCTTTAGATTCTACTCTCCCTCTTGGAAGCAGATTGGTGAAGACCGTGTTGGCTCTCATTGAGTCATCTATACCATCTGAAGCTTTAGAATCATGTTGGACTGAAGAGCACCGAAGTACTTGGGGCCTGAAGTTAAATATGTCATCATCCATTGAAGAGCTTCTTCAGATGTTGACTCAATTGGAGAGAGTGATAAAGCGAAACTCTCTGTCTGCAAGTTTTTCAACTACACAGGAGCTTTTGGGCTCCATGGCTCCATTGAATTTATCTTGTGATCCAAAAGATTCTGGCTCAGACTCCATTCTGCCATGGATACCACGAACAGTTTCTGCAGTTTCTTTGAGACTTTTTGAATTAGATGCTTCCATTATGTACTGTCAATCTCAGAAATCTGAGCCTGGTTTCGACGACGAAGACAAATTAATGATGGTTGATATTGTAAATGAACAATGGATGCAAATTCAACGTCTTGAACAGGGTCTTCATATGGCAGAATTTCGGAGTTCACTTGAGATGGTGGATTTGTATTTACTTGGAAGTGGCTCTACCTTAAGCTCCATAGTGTCTCGAGCTCTAAATCAGCTGAGAGAAGTATTCAACGGAGTACAAAGAAACCACCATGAGCTGCAAAAGATGATCAAACGACAAATGGAAAGAAATGAATACACTGCATCGCTAATCAACAGCGAATTGGTTTTCTTAGTGGCTTCTGCTCTGATTCTCTTCCCTATTATGAGTGCTTGGATGTTGGTCTCATCACAATTCAGTTAG 4758 41.13 MEGEASDEENRNLDDRDNNKTSNSNEGMGKPKRQMKTPFQLETLEKAYAMETYPGECSRIELSKKLGLTDRQLQMWFCHRRLKDKKEAPAKKNVKMVPAALPDSPSDDLRMGADPGSDYGSGSGSSPFGHTNVRNAMPWSGGDDIRTMRKIREPSQSLMELRAIACVEAQLGEPLKGDGPILGIEFDSLPPDAFGASIEVATEQLKRSGNRYDGRTYERRDSKSNKATPRTFHDFSYLQDVSSIRTDIYGQITQSHYADSVVEVPSARTSSFLHGNEQSTRTHGFHGYLPRARLLSQKDKEGIAIPSPSGDDDFIPPRSSYTNNRINNQLTDHPAIGPENPYLSSDGRSFQNDDILWMERKHKSGAKISKDGEAHEIRIRKELEKQDALRKKGEERIRKEMEKQDRERKKEEEKLLRERQREVERLKREKIRENERRERFLEKENMRAEKRKQKEELRKEREEVRRQAAVEKANARRIARESMELIEDEQLELMELAVSRKGLLSIANLDYDTLQNLDSFRGRTALLSAIGSDFMGSFPPKTVHLKRPFGVKPWTISEENIGNLLMVWRFLITFADILELWPFTLDEFVQAFHDYDSRLLGEIHISLLRLIIKDIEDVARMPSTGLGMNQNGVVNPGGGHPQIVEGAYGWGFDICKWQRHLNPLTWPEIFRQLALSAGFGPQLKKRSIKWSDVRDNNESKGCEDVVSTLRNGSAAENAFALMQERGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVVDLADKIQKSALRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPIDSEEILSSARKKIQIFQNGFLPCEDVERDEESECDDIDEDPEVDDLGTPTLENKNADKRNEEESSVGNGKETLCPDVLSTPQNEFDKDMTTFPFSVSNDAKYSVSDAKQYSCVPEITNLDQENMEIDESKAVLNLLSIIIQDRLEAANALKKQMWAEAQVDKSRPKDELVPKSDFPSIMGIKAEAQHCSTLDGGQSPFPDVDNRSNQVSPSNAENQKSLNGFRTDQDLLNCSRDEKGSVPQDFSVSQDNLLQQIGNATKKSRSQLKSYLGFRAEEMYTYRSLPLGRDRKRNRYWQFVASASSNDPGSGRIFVELHDGHWRLIDSEEAFDSLLISLDTRGIRESNLRLMLQNIETFFKENVRRSVQLNNLVVASGTCVKSCADEMECSPTPPAALDSPSSAVCGLNLDMMVTSSSFKIDLDLGRNETEKQAALKRYQEFQRWAWGECLNTLSAMKYGKTRCKQLLDNCEPCLSSYNSEHSHCLSCHQTFDSNDLNFSDHLIYCEESRKLKHGEMRALDSTLPLGSRLVKTVLALIESSIPSEALESCWTEEHRSTWGLKLNMSSSIEELLQMLTQLERVIKRNSLSASFSTTQELLGSMAPLNLSCDPKDSGSDSILPWIPRTVSAVSLRLFELDASIMYCQSQKSEPGFDDEDKLMMVDIVNEQWMQIQRLEQGLHMAEFRSSLEMVDLYLLGSGSTLSSIVSRALNQLREVFNGVQRNHHELQKMIKRQMERNEYTASLINSELVFLVASALILFPIMSAWMLVSSQFS 1585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4519214 4532822 - Bma005878.1 Bma11g00420 90822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00420 1585 MobiDBLite consensus disorder prediction 392 414 - -
Bma11g00420 1585 SMART testlast3 558 617 IPR018501 -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 1 38 - -
Bma11g00420 1585 Pfam DDT domain 559 614 IPR018501 -
Bma11g00420 1585 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Bma11g00420 1585 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 119 133 - -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 98 141 - -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 1014 1039 - -
Bma11g00420 1585 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1095 1167 IPR028941 -
Bma11g00420 1585 Pfam HB1, ASXL, restriction endonuclease HTH domain 740 808 IPR007759 GO:0006355
Bma11g00420 1585 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 5 1473 - -
Bma11g00420 1585 Coils Coil 1521 1541 - -
Bma11g00420 1585 ProSiteProfiles HARE-type HTH domain profile. 740 809 IPR007759 GO:0006355
Bma11g00420 1585 MobiDBLite consensus disorder prediction 842 891 - -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 866 881 - -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 1004 1039 - -
Bma11g00420 1585 CDD homeodomain 32 87 IPR001356 GO:0003677
Bma11g00420 1585 SMART HOX_1 29 91 IPR001356 GO:0003677
Bma11g00420 1585 Coils Coil 394 474 - -
Bma11g00420 1585 ProSiteProfiles DDT domain profile. 558 617 IPR018501 -
Bma11g00420 1585 Gene3D - 14 89 - -
Bma11g00420 1585 MobiDBLite consensus disorder prediction 842 861 - -
Bma11g00420 1585 Pfam Homeodomain 30 86 IPR001356 GO:0003677
Bma11g00420 1585 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1473 IPR044977 GO:0006357
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00420 Bma-Chr11:4519214 Bma12g00829 Bma-Chr12:38548119 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58036 PF15613 WSD 4.50E-14 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00420 - - jre:108984176 1709.5